PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0197s0015.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 943aa MW: 101814 Da PI: 6.3131

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0197s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	402.1	5.5e-123	580	936	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 lLl+cAeavs ++ + a+++L +lsela+p+g+++qR++ayf+e++a+rl+ s+ + + lpp + ++++ ++a+++f++++P+ Sphfalx0197s0015.1.p 580 LALLLQCAEAVSVNNVNDANSMLLQLSELATPYGSSVQRVVAYFAEGMASRLVASSLGFLSPLPPIQMI--TTQKIISAVQIFNDMCPL 666 579**************************************************99999999999987..59999*********** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 +kfsh+taNqaI++a+eg + vHiiD+di++GlQWpaL++ La+Rp+gpp++RiTg+g s e le+tg+rL++fAe+l++pfe+n Sphfalx0197s0015.1.p 667 VKFSHFTANQAIVDAFEGMRDVHIIDIDIMHGLQWPALFHILACRPGGPPQVRITGLGT----SMELLEATGKRLSDFAETLRLPFEYN 751 *******************************************************....************************ PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + va+r+ ++++++Lrv+ g+alaV+++ h+l+d ++s ++ +L+l+++lsPkv++vveq++ h ++sF +rf+eal+yysalf Sphfalx0197s0015.1.p 752 A-VADRIGNVDPSALRVRMGDALAVHWMQ--HSLYDVTGSDPQ----TLSLLRRLSPKVITVVEQNLRH-EGSFIDRFIEALHYYSALF 832 .8**********************9..999988998888....******************.899************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 dsl a++ e+ +r+ vE++ll+ ei+n++a g +r+ + + +++Wr+ l++aGFkpv+ls kaa+qa+lll +++ dgy++ ++ g+ Sphfalx0197s0015.1.p 833 DSLGANYTDENLDRHLVEQQLLSCEIKNIIAVGGPARTGQPK-FMQWRDELTQAGFKPVSLSGKAATQASLLLGMFPCDGYTLIDQTGT 920 ********************************998887.****************************************** PP GRAS 358 lvlgWkdrpLvsvSaW 373 l lgWkdr L+++SaW Sphfalx0197s0015.1.p 921 LKLGWKDRCLLTASAW 936 ************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.863	553	917	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-120	580	936	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MALVCPNRAS EGFGSVLPTT ISSRLGLCMH NVNNSAAVHR AREFCMAENS LTAAASSHNN 60 YSSASSGRTG QDSSERGGAK QLTAASLEIS SDIQSGPGGG SGLLLATVPN LGIGAAVVGK 120 APGKLASPTP AGWLTYNSSS SVSTFPASSG REDWSMFLPP AAHIPPVLGG PLAMTSSHLF 180 SSPLSVPSQT GTSTAFSNSR EQAAAFSIRD EFHLQSLSAA SPIGMGGSMS GASCNAASSL 240 GKLMEEGSSE QQQQQSLGVA AGSNLLQYEL PHVGSSDAGG QRRDKASLPP SDHHDILQQN 300 VMDHEDTISV WVDGTITELM AAMPGVPLQH LFAKLIEVLE PCNMQLQKLI ESRFHALFGS 360 TTEEAPGWQL QKLSHAHGSP RSASQAGGHG GSSKRMRGNT NNEEDDLLNV HVNEFRSNSG 420 GGELLLRLQG KRHEQHPSSL LPQLPPPMTR DSEAFTTAIE DRSIASLQLS LDPWNQRMQE 480 HSQQQQQQQQ VSAVVEDQFH HLRALEMNLL PVQQQQEQQR QQKYHQPLPQ QQHHHHHEEQ 540 ARTTQNSSST ILHPSAAEVA HYGNQASSSV YENTQGLELL ALLLQCAEAV SVNNVNDANS 600 MLLQLSELAT PYGSSVQRVV AYFAEGMASR LVASSLGFLS PLPPIQMITT QKIISAVQIF 660 NDMCPLVKFS HFTANQAIVD AFEGMRDVHI IDIDIMHGLQ WPALFHILAC RPGGPPQVRI 720 TGLGTSMELL EATGKRLSDF AETLRLPFEY NAVADRIGNV DPSALRVRMG DALAVHWMQH 780 SLYDVTGSDP QTLSLLRRLS PKVITVVEQN LRHEGSFIDR FIEALHYYSA LFDSLGANYT 840 DENLDRHLVE QQLLSCEIKN IIAVGGPART GQPKFMQWRD ELTQAGFKPV SLSGKAATQA 900 SLLLGMFPCD GYTLIDQTGT LKLGWKDRCL LTASAWSSNA HS*

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MALVCPNRAS EGFGSVLPTT ISSRLGLCMH NVNNSAAVHR AREFCMAENS LTAAASSHNN  60
YSSASSGRTG QDSSERGGAK QLTAASLEIS SDIQSGPGGG SGLLLATVPN LGIGAAVVGK  120
APGKLASPTP AGWLTYNSSS SVSTFPASSG REDWSMFLPP AAHIPPVLGG PLAMTSSHLF  180
SSPLSVPSQT GTSTAFSNSR EQAAAFSIRD EFHLQSLSAA SPIGMGGSMS GASCNAASSL  240
GKLMEEGSSE QQQQQSLGVA AGSNLLQYEL PHVGSSDAGG QRRDKASLPP SDHHDILQQN  300
VMDHEDTISV WVDGTITELM AAMPGVPLQH LFAKLIEVLE PCNMQLQKLI ESRFHALFGS  360
TTEEAPGWQL QKLSHAHGSP RSASQAGGHG GSSKRMRGNT NNEEDDLLNV HVNEFRSNSG  420
GGELLLRLQG KRHEQHPSSL LPQLPPPMTR DSEAFTTAIE DRSIASLQLS LDPWNQRMQE  480
HSQQQQQQQQ VSAVVEDQFH HLRALEMNLL PVQQQQEQQR QQKYHQPLPQ QQHHHHHEEQ  540
ARTTQNSSST ILHPSAAEVA HYGNQASSSV YENTQGLELL ALLLQCAEAV SVNNVNDANS  600
MLLQLSELAT PYGSSVQRVV AYFAEGMASR LVASSLGFLS PLPPIQMITT QKIISAVQIF  660
NDMCPLVKFS HFTANQAIVD AFEGMRDVHI IDIDIMHGLQ WPALFHILAC RPGGPPQVRI  720
TGLGTSMELL EATGKRLSDF AETLRLPFEY NAVADRIGNV DPSALRVRMG DALAVHWMQH  780
SLYDVTGSDP QTLSLLRRLS PKVITVVEQN LRHEGSFIDR FIEALHYYSA LFDSLGANYT  840
DENLDRHLVE QQLLSCEIKN IIAVGGPART GQPKFMQWRD ELTQAGFKPV SLSGKAATQA  900
SLLLGMFPCD GYTLIDQTGT LKLGWKDRCL LTASAWSSNA HS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-170	585	937	25	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	PP1S882_1V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	1e-161	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0197s0015.1.p