PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0198s0032.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ZF-HD
Protein Properties Length: 275aa    MW: 29582.5 Da    PI: 8.6553
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0198s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.18.8e-3372129260
           ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                           +++rY+eC+kNhAaslG havDGCgEfmp  g+eg+++alkCaACgCHRnFHRreve e
  Sphfalx0198s0032.1.p  72 KGTRYRECQKNHAASLGNHAVDGCGEFMPL-GDEGSPDALKCAACGCHRNFHRREVEGE 129
                           5789*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2571140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.0E-3074126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.0E-3075126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.46976125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.73E-20199272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-32202273IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26211267IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDLSSNATDI PPLTAPLHDS STKLKMLNSS GNNGTTTITT TTTPMDDIRA LEIAAVNKTL  60
SSQGNNNRKD KKGTRYRECQ KNHAASLGNH AVDGCGEFMP LGDEGSPDAL KCAACGCHRN  120
FHRREVEGEI TCDCHKKLDP KKRGAFVQGG LAQGTPISAV ANPMAYPSVA QFQGKTIAPI  180
MMAMSTGATD SDEHEGGGGG GIGGSSPSTM KKRFRTKFTT EQKEEMCNFA EKLGWKMQKH  240
DEAAVQEFCA NVGVKRHVLK VWMHNNKHTM AKKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-252122691875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402412.14e-87zinc-finger homeodomain protein 1-like
SwissprotA2YWA61e-54ZHD2_ORYSI; Zinc-finger homeodomain protein 2
SwissprotQ6ZB901e-54ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBLA0A2K1J0V69e-86A0A2K1J0V6_PHYPA; Uncharacterized protein
TrEMBLA0A2R6WRS78e-87A0A2R6WRS7_MARPO; Uncharacterized protein
TrEMBLA9RDY72e-86A9RDY7_PHYPA; Predicted protein
STRINGPP1S3_539V6.11e-86(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-48homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]