PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0199s0024.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 519aa    MW: 57139 Da    PI: 6.0153
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0199s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.92.9e-14249346186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsess 76 
                           +W++ e+  L++a  ++ ++l rg+   + W+++++++              ++g  ++++qC+ k +nl+kryk ++e ++   +  s
  Sphfalx0199s0024.1.p 249 EWSEGETTMLLQAFGDKYRALDRGNFTSKIWADIAARVnaygmttvmddgtLAEGPPKTQEQCRIKVDNLKKRYKVEREKKRVSGCAIS 337
                           5*****************************************************************************99998766665 PP

              trihelix  77 stcpyfdqle 86 
                            ++p+fd +e
  Sphfalx0199s0024.1.p 338 -KWPFFDAIE 346
                           .9*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.6E-18249348No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MRMMMHSIVV DHMDGTSSDS HHHVVLGRME MGRPDGLRRL LQEEEDDGHH HHHHHQDDDN  60
RILYGQKVIV HEEENGDVVE EEEQEEDVVV VVEDEGGSAG RTAAGAGDGV LNHHHHHHHH  120
HINNVHKLQH HDEYQEHQQG ENHRNRNGGG EEEHHHLQEQ HNNNSNNCDV GYGVGGPHHH  180
IQHGGGEAKL AELGSDMLRV DTKLVEGGRD RPASDDGDVG TSPPPPGGGG GGEKSGGRGR  240
RTSKEPPIEW SEGETTMLLQ AFGDKYRALD RGNFTSKIWA DIAARVNAYG MTTVMDDGTL  300
AEGPPKTQEQ CRIKVDNLKK RYKVEREKKR VSGCAISKWP FFDAIEELIG SNPRLMRGGG  360
ATAGIGGGGM DPPNVLALEN GAQPLAIRSS VVEEGERIYY LEASGGGGEG DQTSETVPKV  420
SPILMRGGKR KRTLKDIERD NANAASLRAL FEGYNIPSNI IDAMVQEDLD ENTLINTKDI  480
TALIDQLRVK HQLQIKLGPA ERIKQAIEET REKRQTLS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388933.11e-129uncharacterized protein LOC112288694
TrEMBLA0A2K1JT631e-128A0A2K1JT63_PHYPA; Uncharacterized protein
STRINGPP1S39_263V6.11e-128(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-13sequence-specific DNA binding transcription factors