PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0199s0032.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 472aa    MW: 51304.3 Da    PI: 5.3184
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0199s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.5e-15200295186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...........rergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                           +W+++ + +L++a  e+ ++l rg+   + W+++++++             +g  ++++qC+ k +nl+kr+k +ke ++     ++s+
  Sphfalx0199s0032.1.p 200 EWSESATTVLLQAFGEKYRALDRGNFTSKIWADIAARVnaygmsidgggIGEGTPKTQEQCRIKVDNLKKRFKVEKEKKRVS-GSTTSK 287
                           5************************************************9**************************999975.666679 PP

              trihelix  79 cpyfdqle 86 
                           +p+f+ +e
  Sphfalx0199s0032.1.p 288 WPFFETME 295
                           *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-18200297No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MRMMMMMGGG GGGNMDGRSS DEHHVVVGRM EMGPEGLRLL EDNGNRILYG EKVMVVEKAE  60
DEEEEEEEEE EEDDGDGHVH SNKLANRVYT LQQEQLPGEN GAEEHQGGGV AVTGVYGVGV  120
MGNGGGVGGV QQQLHHSYHH HDELVVEPKL GELGNSMLRV GGDSKSERPA ASEGDVVGTT  180
QSPRTAKSSR GRSSRDPAIE WSESATTVLL QAFGEKYRAL DRGNFTSKIW ADIAARVNAY  240
GMSIDGGGIG EGTPKTQEQC RIKVDNLKKR FKVEKEKKRV SGSTTSKWPF FETMEELIGS  300
NPRLMRGGAA GGSSGGDLAL YGLENGAAAA QQQQQQQQPL AIRSSLEEAA ARIYYLEAPH  360
SGEGDQTSET VPKISPVERG KRKRALKDLE RENVNAVVLR ALFDGFNIPA SIIDAMVQED  420
MDESTLINSK DITGLIDQVR IKHRLHIKLG PAERIKQAIE EAREKRKHAA L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389101.11e-141uncharacterized protein LOC112288783
TrEMBLA0A2K1JTD11e-139A0A2K1JTD1_PHYPA; Uncharacterized protein
STRINGPP1S39_431V6.11e-140(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.22e-16Trihelix family protein