PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0201s0005.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 394aa    MW: 44225.8 Da    PI: 5.3657
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0201s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.75.4e-12108182170
              trihelix   1 rWtkqevlaLiearr....emeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                           rW+++e+l+Li+a+     +  ++++rg l+ + +W   ++++++ g++rs+ q k++w++l+  y  ike++++
  Sphfalx0201s0005.1.p 108 RWSESETLTLIAAKHaeaqKHPNSIKRGGLNfQRKWVIMAERCKALGMQRSAHQLKKRWNSLHSNYVHIKEWQSQ 182
                           8*************96554555556677666699**************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.237101170IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.6E-4103170IPR009057Homeodomain-like
PfamPF138371.5E-11107190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEPPEKADAT PEDVKPKDLN VEDTSGGGFE NIQDDDPKVD GRKLDDDVKL EADMKIEDTK  60
FDDAKMDDES DDSPIEMEDT PIGEEGTDEI IRERLQEQNG VKRVRNTRWS ESETLTLIAA  120
KHAEAQKHPN SIKRGGLNFQ RKWVIMAERC KALGMQRSAH QLKKRWNSLH SNYVHIKEWQ  180
SQPGAPDFWS MDRKERMIHK LPAYFHDVIY KALEQPSSIV LPLRPITSSS NLGGTSGGED  240
TLDSSEDNDR STYPVVTFPA SSSQPPPLPP LPPVYSRTLP LPQLQEPPHF ASLSRPPRAP  300
GPAPLVSNGR AHTQCPDLKD VWLETFLHGF SVDPKVIKAL QKEEVTVKVL VDEGTEEGVY  360
KLLKMVAEAT GVKITVGQRA RIWHAVRQWR DNI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-14Trihelix family protein