PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0205s0005.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family DBB
Protein Properties Length: 237aa    MW: 25893.3 Da    PI: 6.754
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0205s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52.1e-06434536
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                           C+ +e   ++lfC  ++  lC  C ++ H g
  Sphfalx0205s0005.1.p  4 LCDVCEAAAARLFCAADEAALCLRCDEKVH-G 34
                          7******99******************999.4 PP
2zf-B_box21.83.9e-075492438
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                          + C+ +e+ ++ +fC  ++  lC +C +  H g    H+
  Sphfalx0205s0005.1.p 54 PHCDICENAPAFFFCGIDGASLCLQCDVDVHVGvkksHE 92
                          78***************************9966666676 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.665147IPR000315B-box-type zinc finger
SMARTSM003362.4E-6447IPR000315B-box-type zinc finger
SMARTSM003369.4E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501198.7745196IPR000315B-box-type zinc finger
PfamPF006432.9E-55492IPR000315B-box-type zinc finger
CDDcd000216.68E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKILCDVCEA AAARLFCAAD EAALCLRCDE KVHGCNKLAS RHMRLELAES RAVPHCDICE  60
NAPAFFFCGI DGASLCLQCD VDVHVGVKKS HERYLLTGQR VEHPTRKLTV KESIAVDIQA  120
RDFNSDRTQQ QQIIHHHHHH HHHHHDDALQ AETIIIANSS GEHKSSNVVG DKKDHLMLKN  180
NQPVSGMIDL NAQPRHLLSQ ASLPDKGDGE KAPTLTSSDD GVSVVPSLPS TALQVA*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381275.18e-71B-box zinc finger protein 18-like
SwissprotQ9SJU51e-48BBX18_ARATH; B-box zinc finger protein 18
TrEMBLA0A2K1KAG42e-69A0A2K1KAG4_PHYPA; Uncharacterized protein
STRINGPP1S207_121V6.13e-70(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.14e-41DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]