PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0206s0037.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 384aa    MW: 42043 Da    PI: 10.17
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0206s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31313370359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YY+C+s  +Cp++k+vers ed +++++tYegeHnh+
  Sphfalx0206s0037.1.p 313 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrNCPARKHVERSLEDSSMLIVTYEGEHNHS 370
                           99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-19262309IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.6E-33299370IPR003657WRKY domain
PROSITE profilePS5081129.872306372IPR003657WRKY domain
SuperFamilySSF1182907.45E-27309371IPR003657WRKY domain
SMARTSM007741.3E-37311371IPR003657WRKY domain
PfamPF031067.9E-27313369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEVLEYSSSL LGKRNRDYEV QVAAKKGIDN AKRLLQILSQ QQQPRSSHGD EEERHSAAGI  60
AVSMFQKVVT LLSRTGHARF KSSPQNPAIA GDDSVFFETA NFAQDLNRKE TEREANFIVA  120
EEPAAAAATI VKPLWQYPLW PDSHGNAAVP PPSFLQHARQ IRQQQQHHLH LQQQQQKQQQ  180
QQLHVAVAPI GFIPTRSLEN NSVSSSGPPL STTTKSGFSA VSMDGSGATT NNNNNVQQTS  240
SSLPAAGPQP QHAISHTSTK KRKKCSATSE ENGGGKSCAS AGRCHCSKRR KLRVKRTIKV  300
PAISSKLADI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV RNCPARKHVE RSLEDSSMLI  360
VTYEGEHNHS CTPSTSTALN VQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20304373775WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259263KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400156.11e-96probable WRKY transcription factor 17
TrEMBLA9SCG72e-95A9SCG7_PHYPA; Transcription factor WRKY7
STRINGPP1S65_236V6.14e-96(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-57WRKY DNA-binding protein 74