PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0217s0041.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 571aa    MW: 61073.8 Da    PI: 7.4119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0217s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-182368147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEd  l ++v+++G ++W++I++ ++ gR++k+c++rw + 
  Sphfalx0217s0041.1.p 23 KGPWSPEEDAALQQLVEKHGARNWSLISKGIP-GRSGKSCRLRWCNQ 68
                          79******************************.***********985 PP
2Myb_DNA-binding49.69.1e-1677119347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++T+ Ed  +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Sphfalx0217s0041.1.p  77 PFTAFEDSAIIQAHHLHGNK-WATIARILP-GRTDNAIKNHWNST 119
                           79999***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.1931873IPR017930Myb domain
SuperFamilySSF466893.75E-3120116IPR009057Homeodomain-like
SMARTSM007175.0E-172271IPR001005SANT/Myb domain
PfamPF002493.8E-182368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-242476IPR009057Homeodomain-like
CDDcd001671.29E-152567No hitNo description
PROSITE profilePS5129419.69674124IPR017930Myb domain
SMARTSM007174.1E-1374122IPR001005SANT/Myb domain
PfamPF002494.0E-1377119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2177123IPR009057Homeodomain-like
CDDcd001671.00E-1077120No hitNo description
PROSITE profilePS508738.614377570IPR002016Haem peroxidase, plant/fungal/bacterial
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MALVSSATKA SPTQVLEEFD RIKGPWSPEE DAALQQLVEK HGARNWSLIS KGIPGRSGKS  60
CRLRWCNQLS PSVQHRPFTA FEDSAIIQAH HLHGNKWATI ARILPGRTDN AIKNHWNSTL  120
RRRHLAETTT SSERERRSLR RGAAETTTAD DGVSSLIRIS NNNNDEEEIG SFDGRKRNSN  180
EISISISTDG SLQEESGWEV DSHRLKKLSF GKTDNNDDHH AQQQQHRSNS KRLSISGADD  240
DAAAPQRLRK LSFAGSDSSA MSSFLPPSDH DIPAKLNKKH GFGSESSTLL MPAPPSLFRP  300
VPRASAFNTF TPTPAPPPPA PPLSSYCHAS SSALAGVQQD SIVERHKDMI HNQAEEEALA  360
TVDPTTSLSL SPPGTDQSCT TSQVSAAAEQ QVVEKKQPPT TPMSSSAFTE SSTAAHVYQA  420
PSMNGLFFGP NSETCANLLS VAVKSAVAQV LAPVFPPPQP VAQGGMGANW ASSSSSSSAL  480
APFGSSINSS SSYGLDAAVN AGLLAMMRDM VAKEVHNYMA AVHSSSCFPS FHAFATHHEH  540
ATSLASRATT FSNQPEFLGA MATTAPRKAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-37201234107B-MYB
1mse_C8e-37221233104C-Myb DNA-Binding Domain
1msf_C8e-37221233104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00632PBMTransfer from PK28565.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.16e-56myb domain protein 70