PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0221s0015.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 634aa    MW: 68272.4 Da    PI: 4.7855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0221s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1672119148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT  Ed +lv +v ++G g+W+++ ++ g+ R++k+c++rw ++l
  Sphfalx0221s0015.1.p  72 KGPWTSAEDAILVSYVSKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 119
                           79******************************************9986 PP
2Myb_DNA-binding45.41.8e-14125168146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g+++++E+  ++d++ ++G++ W++ a+ ++ gRt++++k++w++
  Sphfalx0221s0015.1.p 125 KGAFSPDEERTILDLHSKFGNK-WARMAAQLP-GRTDNEIKNYWNT 168
                           799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.13667119IPR017930Myb domain
SuperFamilySSF466892.89E-2969166IPR009057Homeodomain-like
SMARTSM007173.0E-1471121IPR001005SANT/Myb domain
PfamPF002491.4E-1472119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2373126IPR009057Homeodomain-like
CDDcd001679.97E-1174119No hitNo description
PROSITE profilePS5129423.942120174IPR017930Myb domain
SMARTSM007171.8E-14124172IPR001005SANT/Myb domain
PfamPF002492.0E-13125168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-24127174IPR009057Homeodomain-like
CDDcd001673.35E-10127168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MRSAAHDHPV DFWCLCGWVV GLDNSSCSSS CCSQAFVVAV VFVVAGYLLG IFMDLCHQEE  60
MFQQLDGVNL KKGPWTSAED AILVSYVSKH GEGNWNAVQK HSGLFRCGKS CRLRWANHLR  120
PNLKKGAFSP DEERTILDLH SKFGNKWARM AAQLPGRTDN EIKNYWNTRI KRRLRAGLPA  180
YPLDMTKHVS SSVPPQYYCE QEDGRDNMGI RRTDLETKFT SSASLGDHKS CQLSSLHGGY  240
ESRNFYAITS ISDLPFTSVV ANQGLGVVGK GIGNPLPQVK RVRHSLCGGT DGSGGSVSFS  300
QLSDGSGKTL QPELYTEAGR TCTHNSTKMA MMSVFADEPD PYIAPYDGTK GLMGMPFCSF  360
APNASSKLEL PLSQSAESAD SVGTLQSAIM SPLMSLSLSS QLLSEADSFG SNASNFLEAL  420
MKEAHPTEGL DQGGRTDLID QLLVLTSGNI SADIAALLMG TDNSSWGEDI NPMATVETCD  480
SSYQENVSLN CCNDSVKDPA TSPLLQSAVP PSLSASQVAG PRVAEMSAEV PLGESTDDEF  540
LTILASSETV PQWYIPPEDY SVGSISCTSL ADVVDNEASC EVAVELDYQV PGLTGPNHHS  600
ELNSSPWNVT SSSVAIQENF LLSKGHKSFL ESR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31691744108B-MYB
1h8a_C8e-315917414128MYB TRANSFORMING PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174RIKRRLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.15e-67myb domain protein 101