PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0229s0018.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 423aa    MW: 46761.4 Da    PI: 6.6672
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0229s0018.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.5e-51171521128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                           +p+GfrFhPtdeelv +yL kkv++k+++l e ike+d+ykvePwdL+        +++++++++yfFs++dkky+tg+r+nrat++g+
  Sphfalx0229s0018.2.p  17 VPVGFRFHPTDEELVGYYLPKKVAAKHIDL-ELIKELDLYKVEPWDLQDvckigadTITEKQTDYYFFSRKDKKYPTGNRANRATTAGF 104
                           599***************************.99**************944777776666677899************************ PP

                   NAM  83 Wkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           Wkatg+dk+++++   ++l+g++ktLvfy+grap+g+ktdW+mhe+rl
  Sphfalx0229s0018.2.p 105 WKATGRDKAIYVAkdVQQLIGMRKTLVFYEGRAPHGNKTDWIMHEFRL 152
                           ***********98555666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-543174IPR003441NAC domain
PROSITE profilePS5100554.95717174IPR003441NAC domain
PfamPF023655.7E-2618152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MTHHHSSSSP PISCTRVPVG FRFHPTDEEL VGYYLPKKVA AKHIDLELIK ELDLYKVEPW  60
DLQDVCKIGA DTITEKQTDY YFFSRKDKKY PTGNRANRAT TAGFWKATGR DKAIYVAKDV  120
QQLIGMRKTL VFYEGRAPHG NKTDWIMHEF RLDDGPAMPA HDDGGWVVCR VFKKSKNFKM  180
KSTEERAVSF EGSSQFGLSM PLENSNIMGR ESPEILSEAA AHHGSASCCY PAALVPCKQE  240
IITQLMDNSC SSYDDPFNNA PPLHQMAQQL GMHNKLQQSN NNGSCRKLLD TGSFFSAEQY  300
YALENDHNFS PCTGLFASSD AARCNDNIPG VLSGFPALDD WAGVYHESTG MRSTGAAAAA  360
DSFRSPAAAT TTARAAAADQ SLMGGAGDIH ILLQLKRQNS DLFPSSCEFD LWNFNQMSYQ  420
SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4421742165NO APICAL MERISTEM PROTEIN
1ut4_B1e-4421742165NO APICAL MERISTEM PROTEIN
1ut7_A1e-4421742165NO APICAL MERISTEM PROTEIN
1ut7_B1e-4421742165NO APICAL MERISTEM PROTEIN
4dul_A1e-4421742165NAC domain-containing protein 19
4dul_B1e-4421742165NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-75vascular related NAC-domain protein 1