PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0231s0014.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family TCP
Protein Properties Length: 567aa    MW: 57755.9 Da    PI: 8.0231
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0231s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.98.5e-39942212133
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 
                           ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq a+pai+ +tgt++ +a+++  a++ +ss++      
  Sphfalx0231s0014.1.p  94 PPKRSSTKDRHTKVDGRGRRIRMPASCAARIFQLTRELGHKSDGETIEWLLQRAEPAIISATGTGTVPANSSsIAGTLRSSSG-----M 177
                           789*************************************************************9999966643444444433.....3 PP

                   TCP  90 aaksaakskksqksaasalnlakesrakarararertrekmrik 133
                           aa++aa    +++  + al+la+     a a+a+ r +++ r++
  Sphfalx0231s0014.1.p 178 AAAAAAAAAAARTGLHGALALAAPPGGPAAAEAERRMHQELRTS 221
                           44444455555555555577777766666666666666665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-3099342IPR005333Transcription factor, TCP
PROSITE profilePS5136927.412100154IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MTAMGVQGIG ASGSSQVDAT ALGMAGMGQE QQQYGGGGGG EGQGGGLSGM SSMTMSSQQQ  60
QQQQQQEAAA AAMAASASGG AGDPNPPVPV KKPPPKRSST KDRHTKVDGR GRRIRMPASC  120
AARIFQLTRE LGHKSDGETI EWLLQRAEPA IISATGTGTV PANSSSIAGT LRSSSGMAAA  180
AAAAAAAART GLHGALALAA PPGGPAAAEA ERRMHQELRT SQEWGGSSSS AEERVLDATR  240
AMEASRRLSM GHGDSSMAHE MMAVGFQQQQ QQQQLHEGGM VPGGSEVGEG GLETTSDGRG  300
LRKRPRASSS MARMKEENES QSRTTTVRAT ATRQALQQQQ QQQQHQHQQH QQVAAGVGGS  360
ANMMQAAAMW AVAPAVAGVQ NSGAMPAIWM LPVTAGGASA AGVMGAEQQQ HQQQLWTFPP  420
SAGAYRMAAA SGGGGGPGGG SSSSNVPQSP SSSGNTMMAS VIPGGVTLMP RINLQGGGGL  480
ELQGSHMGHH MPLGSMLLQQ QQQQQQQGAQ QQQLPPPTGL GLGGEGHLGM LAALNAYSRN  540
LNPDSHQSMS SGHQQGDSGD DPTSSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430440SGGGGGPGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371284.11e-130transcription factor TCP22-like isoform X1
RefseqXP_024371285.11e-130transcription factor TCP22-like isoform X1
RefseqXP_024386490.11e-130transcription factor TCP22-like
RefseqXP_024386491.11e-130transcription factor TCP22-like
RefseqXP_024386492.11e-130transcription factor TCP22-like
TrEMBLA0A2K1JZT01e-129A0A2K1JZT0_PHYPA; Uncharacterized protein
TrEMBLA0A2K1KVX91e-129A0A2K1KVX9_PHYPA; Uncharacterized protein
TrEMBLA9TX821e-128A9TX82_PHYPA; Predicted protein
STRINGPP1S356_40V6.11e-130(Physcomitrella patens)
STRINGPP1S67_183V6.11e-130(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-38TCP family protein