PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0244s0009.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 360aa    MW: 39527.8 Da    PI: 4.8007
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0244s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17287321135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C+t  Tp+WR gp g+ktLCnaCG++y++ +l
  Sphfalx0244s0009.1.p 287 CTHCQTQRTPQWRTGPMGPKTLCNACGVRYKSGRL 321
                           *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.6E-18281335IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.767281317IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15285344No hitNo description
CDDcd002022.61E-14286335No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14286319IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440287312IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15287321IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDSDALLLPA GLVAFDNSLK KQQQQQKPLT VAAADAAGSS FADIFQIDDL LDFSNEDIAG  60
PIGEAVHVLK PETIGGCLTP FLENGTELQH LAPKAHKLEG EEEEAAIEAD LCLPQYDDLE  120
ELEWASRFLE DSFPVTGDDE SHKTWSDDNG SAISIGEKET ELSALFMKKQ HQYYEKAAAS  180
PVSVLEHQAS ATSSELTGSD HSLDFCVPGR ARSKRSRSEG KKWTSGILSS TTTSCGTNRV  240
SASPSQWSAG EEEDTVEEGE EWQSCNFQKA KQSRKSSSQQ DGEVLRCTHC QTQRTPQWRT  300
GPMGPKTLCN ACGVRYKSGR LLPEYRPASS PAYIPHKHSN SHKKILEMRQ QREMMEASM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-45GATA transcription factor 9