PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0246s0020.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 573aa    MW: 61638.3 Da    PI: 6.7872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0246s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.6e-16455501455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY++ Lq
  Sphfalx0246s0020.1.p 455 VHNLSERRRRDRINEKMKALQELIPNS-----NKTDKASMLDEAIEYLRTLQ 501
                           6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.2E-19449510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-19449510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.19451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-17454505No hitNo description
PfamPF000101.6E-13455501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MQCEGSNGCK LQWQPSYGSS GDKGQVADDG TLEAVVNETA AETTLTPKIN YHDHETVSWL  60
QYPLDDTLER KYCSDFFGEL PSSNMQVVKG SFVGQGAGCL QCMPIPNNMV TDAVVNKATS  120
TEAAMILHAG HAAGVIVQTG EEVFNKVQTL QPLVSRWQPY SLTPNSSKGF GVYPTVSQAP  180
LRTSSPASRP PLAPMAPPKP QSRGGMDNMH ADSARKLASL NSLHSSRSAV TMKNHQSVGV  240
LTGTPSSMFS KQMSVKVNAE AGTLTSSSIA ESATTGRSGM GCQNNIEIHL QGSDSQQQSQ  300
GVDARGHCPV IRKEVDTLVL EGEAMLPVPV PSGRKEVDMP VLEQETVLGT TKPTEQDTLQ  360
KSPVTASAAL ESADKWMSQG RQDPDAQELT ITSSLGGCGN SAERAKQAST SNKRKAVVTE  420
EPECQSEDGD DESADSKRRP EGRASTTKRT RAAEVHNLSE RRRRDRINEK MKALQELIPN  480
SNKTDKASML DEAIEYLRTL QLQIQMISMR TGLRMPPMVR SAGTQYLQIP SLEMTSIPSL  540
GLGMGRGLGM SRMDMAASTS NLQPHGYLKH SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1459464ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-39phytochrome interacting factor 3