PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0247s0019.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family M-type_MADS
Protein Properties Length: 352aa    MW: 39150.5 Da    PI: 8.4123
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0247s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.71.9e-201058250
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          + e+++nr  tf+kR  g+lKKA ELS+LCd++va+i fs+tg+l  y+
  Sphfalx0247s0019.1.p 10 KLEEETNRRSTFTKRGSGVLKKACELSILCDTDVAIIAFSPTGELLYYC 58
                          67999****************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.871161IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-23160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-23279IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-18323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-171155IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGKVKIETKK LEEETNRRST FTKRGSGVLK KACELSILCD TDVAIIAFSP TGELLYYCNT  60
SVADVMKRFA DVDPNRRTEM YNLKSEYWIF NEFRVGFVHS LERQIARLES QCKISLKDHP  120
QRSRLVFIHC SFKAKIMKQQ LNLVFGGMQL LQESLLRVTG DEDRINPLAP KRMHRARAAA  180
AGVRFAPQPE VQQVTELQPL PPPQQPVSPG SCVTCASAAA SVRFLPQAEI QQVAQLQPAP  240
ASQTPIGVAL GTTSGQNSCL DPMCMNSKAS ASQYHHTSFQ YSVQAAYDNA RFLNQSLQQM  300
QHDHHQSTDY KQGIREDQGF GGNLWAPFPA CSNTNLAQGT FESIDGQHPL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-13173173MEF2C
5f28_B1e-13173173MEF2C
5f28_C1e-13173173MEF2C
5f28_D1e-13173173MEF2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.23e-20AGAMOUS-like 30