PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0249s0015.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 565aa MW: 64093.3 Da PI: 10.248

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0249s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	44.5	2.5e-14	23	81	1	59
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse 59 lv+lLl cAea+ +++ e+a lL++l+ ++sp+gdpmqR++++f+eAL+ r r+ ++ Sphfalx0249s0015.1.p 23 LVHLLLGCAEAIGASEYERAGDLLCHLRAISSPQGDPMQRIVFHFAEALSDRRRRHNNN 81 68************************************************998883333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	8.8E-12	23	81	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MSHPGQEQHL DQADNSTSGG LQLVHLLLGC AEAIGASEYE RAGDLLCHLR AISSPQGDPM 60 QRIVFHFAEA LSDRRRRHNN NTNMLNSQYD QYRHKASYCD LVRPATNNTS RNATASACSK 120 PTAAAALIQQ LHHFVIETIQ AIRQVDLVEL IEVVVQVAFL SIFFTVLLLI ILLIDLGCMS 180 GISAELLQPS NERAVASDTR ASFETDCVNV SGWPTCDYVC QRWPRLASCE WPRATSSDVS 240 TLSRPPTPTY VAAWRIRQRN RRHHLQHGWM VRSPRLRKAS MCSLARLSRR SSNRGSVRKA 300 RACVGEKIVL RRWQTNKDAV KIRSFRLLGR LMPRSFDMIS VGSWHIAVRT RFRRLAASWT 360 VPQRVFVNRM STSMSLTYTF HEEYDLFDNQ LDNRKFLHQV HAQIMQRMRR AAERKQKLGI 420 LDTHATQLDH DRRRIRAESE HRRSHKMLVH SGNLLRIGIA ITSIGTNNVA DKARCKLPDC 480 EQQAALAINQ FLVQVFGAFP LHGKVFQEKR HRPASHHVND LLALNVCGAV QGQANHDELL 540 QVTHDLDHDV RVLQAQQVAA DHFC*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MSHPGQEQHL DQADNSTSGG LQLVHLLLGC AEAIGASEYE RAGDLLCHLR AISSPQGDPM  60
QRIVFHFAEA LSDRRRRHNN NTNMLNSQYD QYRHKASYCD LVRPATNNTS RNATASACSK  120
PTAAAALIQQ LHHFVIETIQ AIRQVDLVEL IEVVVQVAFL SIFFTVLLLI ILLIDLGCMS  180
GISAELLQPS NERAVASDTR ASFETDCVNV SGWPTCDYVC QRWPRLASCE WPRATSSDVS  240
TLSRPPTPTY VAAWRIRQRN RRHHLQHGWM VRSPRLRKAS MCSLARLSRR SSNRGSVRKA  300
RACVGEKIVL RRWQTNKDAV KIRSFRLLGR LMPRSFDMIS VGSWHIAVRT RFRRLAASWT  360
VPQRVFVNRM STSMSLTYTF HEEYDLFDNQ LDNRKFLHQV HAQIMQRMRR AAERKQKLGI  420
LDTHATQLDH DRRRIRAESE HRRSHKMLVH SGNLLRIGIA ITSIGTNNVA DKARCKLPDC  480
EQQAALAINQ FLVQVFGAFP LHGKVFQEKR HRPASHHVND LLALNVCGAV QGQANHDELL  540
QVTHDLDHDV RVLQAQQVAA DHFC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6W3I8	1e-70	A0A2R6W3I8_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	3e-08	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Sphfalx0249s0015.1.p