PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0253s0009.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 714aa MW: 78391.3 Da PI: 5.074

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0253s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.7e-11	529	574	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++ N+++++L +l+P kK + +++L+++++YI++L+ Sphfalx0253s0009.1.p 529 HKLAERCRRSKFNDKLQTLCTLVPII-----KKKDRVSVLTHTIDYIHQLK 574 99*********************7.....699*************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.63	524	573	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-14	527	587	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-13	529	583	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	529	573	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.48E-12	529	577	No hit	No description
SMART	SM00353	2.4E-11	530	579	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MTGAVSLLNL RMSEDEISQK RLKDLVQSLG WTYGVIWKLS SSDRVLEWVH GWFNPASTES 60 GQTLMPQFYS IFKTCSFKDP CAPGYSTLAL QQHSPVWWTS NMAEVPTDKC KARFLQEAHI 120 QTVVCIPWPG ADGMYCTELA TTALVPQTDA LMNSLQEYVS MSVTPHVFGA VEPPLPSSLG 180 SLDSQEEEYL NSDQFSSLPV ASPLDSGTTG AQTLAPGLSE AGFVPPVNLN RYAPSNFNES 240 LGSSGMILKE EEPYYPWTAT GNLSFFDYEF DTDIDVEKTM FDSLDSKEAT KSLSSIGVMS 300 PCKWDPDTLE PKEVVLAAAV PDFPASSLEH SSHTNSVSLP AQNAEDLLVL LAGTKPHDQS 360 ASKSMATVTP QMDGHISTIS HLLESVSSYG TPQAEVKTAE QETPSIDPFY LQQSTDMSFT 420 QNLPGWPHNG TNPLMDMHSK NLVLPVSHFQ HSHQSFFQRR GCSKLEVPAG HARPARQSLF 480 MLWTEKIVPM IKEEAQKEKL AEQELARSCP SSGETVRPNP ANDEAAHVHK LAERCRRSKF 540 NDKLQTLCTL VPIIKKKDRV SVLTHTIDYI HQLKTQVTQL EKAAGPLLKQ EKGIDYSQPP 600 ASTMSEEFST LSSSSRSPIK VAVSPNEDGL VINVEASNHT ETLVRILSVS RDLGLEIRSF 660 NSKSINDQVQ VAVNVVVQGV HEMSSRHVQE ALWGVLVASD SSLSPITSDH LLT*

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MTGAVSLLNL RMSEDEISQK RLKDLVQSLG WTYGVIWKLS SSDRVLEWVH GWFNPASTES  60
GQTLMPQFYS IFKTCSFKDP CAPGYSTLAL QQHSPVWWTS NMAEVPTDKC KARFLQEAHI  120
QTVVCIPWPG ADGMYCTELA TTALVPQTDA LMNSLQEYVS MSVTPHVFGA VEPPLPSSLG  180
SLDSQEEEYL NSDQFSSLPV ASPLDSGTTG AQTLAPGLSE AGFVPPVNLN RYAPSNFNES  240
LGSSGMILKE EEPYYPWTAT GNLSFFDYEF DTDIDVEKTM FDSLDSKEAT KSLSSIGVMS  300
PCKWDPDTLE PKEVVLAAAV PDFPASSLEH SSHTNSVSLP AQNAEDLLVL LAGTKPHDQS  360
ASKSMATVTP QMDGHISTIS HLLESVSSYG TPQAEVKTAE QETPSIDPFY LQQSTDMSFT  420
QNLPGWPHNG TNPLMDMHSK NLVLPVSHFQ HSHQSFFQRR GCSKLEVPAG HARPARQSLF  480
MLWTEKIVPM IKEEAQKEKL AEQELARSCP SSGETVRPNP ANDEAAHVHK LAERCRRSKF  540
NDKLQTLCTL VPIIKKKDRV SVLTHTIDYI HQLKTQVTQL EKAAGPLLKQ EKGIDYSQPP  600
ASTMSEEFST LSSSSRSPIK VAVSPNEDGL VINVEASNHT ETLVRILSVS RDLGLEIRSF  660
NSKSINDQVQ VAVNVVVQGV HEMSSRHVQE ALWGVLVASD SSLSPITSDH LLT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0253s0009.1.p