PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0257s0015.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 346aa    MW: 36417.5 Da    PI: 8.6968
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0257s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-09117143127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC++f     C++Gd+C+FaHg+
  Sphfalx0257s0015.1.p 117 FKTRLCNRFDTAEGCRFGDKCHFAHGE 143
                           79***********************96 PP
2zf-CCCH39.31.1e-12311335126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykt+lC ++++ GtC +GdrC+FaHg
  Sphfalx0257s0015.1.p 311 YKTKLCENYSQ-GTCTFGDRCHFAHG 335
                           9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.14572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2964573IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-64670IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-74770IPR000571Zinc finger, CCCH-type
PfamPF146082.15370No hitNo description
SMARTSM003560.0012116143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685116144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-8117147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-13117148IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6117143IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.04E-15214293IPR004088K Homology domain, type 1
SMARTSM003222.8E-13223293IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.9E-17223292IPR004088K Homology domain, type 1
PROSITE profilePS5008415.011224288IPR004088K Homology domain, type 1
PfamPF000135.5E-12226290IPR004088K Homology domain, type 1
CDDcd001052.15E-14228288No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-16308342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-9309340IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7310336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.924310337IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10311335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDPYGPPRKR PRPDQTAAAH NGVNGHGLGV TQAPADHDNK HDGSGNRTKP CTKFFSTSGC  60
PYGEGCHFLH FVPGGIQGVG LGALVPLSNV GSMGGTGTRK VVGGLGPDDQ GANLGGFKTR  120
LCNRFDTAEG CRFGDKCHFA HGEIELRKSN NSSLLPLEHD VYSSVDHNRD RGYRGGGMYG  180
ADGGRFGTGR ERDSGGRFGG ASGMGSYREP TPPGMAAAAS FGASSTAKIS IEASLAGAII  240
GKGGINAKQI CHLTGAKISI REHESDPTLR NVEMEGSFEQ IKQASQMVRE VLMHRDNAPS  300
RPAGGVGSRN YKTKLCENYS QGTCTFGDRC HFAHGSAELR EPQRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1812KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386818.11e-162zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386826.11e-162zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386832.11e-162zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386840.11e-162zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2K1L9591e-161A0A2K1L959_PHYPA; Uncharacterized protein
STRINGPP1S59_351V6.11e-162(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-28C3H family protein