PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0261s0009.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 235aa    MW: 25821.8 Da    PI: 8.0391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0261s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-18654254
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                          +y+GVr+++ +g+Wv+eIr+p+    ++r++lg+f tae+Aa a+++a++ + 
  Sphfalx0261s0009.1.p  6 RYRGVRQRH-WGSWVSEIRHPVL---KTRVWLGTFETAEDAATAYDEAARLMC 54
                          69******9.**********744...5**********************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-31563No hitNo description
SMARTSM003805.3E-38669IPR001471AP2/ERF domain
PfamPF008471.6E-10655IPR001471AP2/ERF domain
PROSITE profilePS5103220.666663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-33663IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-20664IPR016177DNA-binding domain
PRINTSPR003671.1E-10718IPR001471AP2/ERF domain
PRINTSPR003671.1E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRPQRYRGV RQRHWGSWVS EIRHPVLKTR VWLGTFETAE DAATAYDEAA RLMCGNRART  60
NFPFDPNAPY TPKTQMLSAT LSAKLHRWYL ASQDKNNVLQ LQQQATPGAK NNDKSSSCST  120
MEQSLTCLCL DAEQSNLGIW QKKTGRQAEA NWLRKVQFDS CNSNSSPLLK PDQPAGAAAG  180
SQISSYMSEE DKFASEMIEE LLGYNSAGQF QLMSPALSDS SCCSSSTSSL TASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-18564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-18268168ATERF1
3gcc_A8e-18268168ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386105.11e-96ethylene-responsive transcription factor ERF003-like
TrEMBLA9S9843e-95A9S984_PHYPA; Predicted protein
STRINGPP1S79_25V6.14e-93(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-39ERF family protein