PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0262s0012.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 1054aa    MW: 112409 Da    PI: 6.578
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0262s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.85.1e-946599652309
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn...........ssee 77 
                             lLl+cAeavs+++ e+a+++L +l ela+p+g+++qR++ayf+e++ +rl+    +s++ +    +e+s+               + 
  Sphfalx0262s0012.1.p 659 LALLLQCAEAVSANNVEEANSILPQLTELATPYGSSVQRVVAYFAEGMTSRLFAtcIGSNIWE----WESSPAAspagnimqrisNHKI 743
                           579**************************************************9333444444....3333333333456666655556 PP

                  GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerL 165
                           ++a+++f++++P++kfsh+taNqaI+ea+eg ++vHiiD+di++GlQWpaL++ La Rp+gpp s+RiTg+g     s e le+tg+rL
  Sphfalx0262s0012.1.p 744 VSAVQVFNDICPFVKFSHFTANQAIVEAFEGMSEVHIIDIDIMHGLQWPALFHILALRPGGPPqSVRITGLGT----SMELLEATGKRL 828
                           667788*****************************************************888889********....************ PP

                  GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                           ++fA++lg+pfe+ + va+r+ ++++++L+v+  ++alaV+++   h+l+d ++s ++    +L+l+++lsP+v+++veq++ h ++sF
  Sphfalx0262s0012.1.p 829 SDFAQTLGLPFEYIA-VADRIGNVDPSALKVRMgRDALAVHWMQ--HSLYDVTGSDPQ----TLSLLRRLSPTVITLVEQDLRH-EGSF 909
                           ***************.8****************99********9..999988998888....**********************.899* PP

                  GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                            +rf+eal+yysalfdsl a+ + +s +r+ vE++ll+ ei+n++a  g +rr   
  Sphfalx0262s0012.1.p 910 INRFVEALHYYSALFDSLGATHADQSTQRHIVEQQLLSCEIKNILAPGGPARRRSS 965
                           *********************9***************************9987655 PP
2GRAS62.86.9e-209841049308373
                  GRAS  308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                             ++++++W++ l++aGFk+v+ls kaa+qa lll +++sdgy++ e+sg+l lgWkd  L+++SaW
  Sphfalx0262s0012.1.p  984 TTTRFGQWQQELRQAGFKAVSLSGKAATQAALLLGMFPSDGYTLVEQSGTLKLGWKDLCLLTASAW 1049
                            56789************************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.1386321030IPR005202Transcription factor GRAS
PfamPF035141.8E-91659965IPR005202Transcription factor GRAS
PfamPF035142.4E-179841049IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1054 aa     Download sequence    Send to blast
MALVCPNQPR ETLGHVVVLP GSAMISRLGL CAAHADHHVN TASSDHPAAH ELAASGDQQL  60
QQFCMAEDSS TTVSSGSTSC HNYSAASAAA PTSCAGGSTG PTSAGGIWPS FSSSALARSS  120
SFVPSASAAA STSSYGDWSS MPQFPHQSAA DRTPSAPVPA AFNLGIAAGH ASAMTPSTSY  180
LQWSSPFSSV PALAASHDQT GNRLFYPNSN AAAQPRPDVV AIRSTTGSLA SCDTSSWGEL  240
QLSSVAEAAG SSASASHQQR FLGVAAPAAA NQYEILPSRA SGGFSSYHAA AGQRVVETRT  300
ARQGEDDMQQ VQDAEVDTVS AWVDGRIGEL MAAMPGVPLQ HLFAKLLEVL EPCNTQLEKV  360
IAARFHALSS SAAGSPHEAA AAGSKIQKQS QAHVAGSNKR MRENTNDDLH AREERDNQVL  420
QLQRDQHRLA GRAVTATAAS SHPLQSCNPP SRRSNQLTAA APHTSGFSPL PPQSLPLLPP  480
MMQQTDSENF AIRPQLLLDE APAGSNLAAA SLQLSLDPRN VEMNLLPDLQ QQQRHQLHEL  540
QQPPQQQLQT HHHHHHHHHR QLQHEQLAAR NSQNYSSPSA LQQLPASTEP RHSSYGSQAS  600
AYVNQDLHTG AEQSRAYQYN LHELQPPPAA PAAAPPSSST TSMYLVSETA YDEKGLELLA  660
LLLQCAEAVS ANNVEEANSI LPQLTELATP YGSSVQRVVA YFAEGMTSRL FATCIGSNIW  720
EWESSPAASP AGNIMQRISN HKIVSAVQVF NDICPFVKFS HFTANQAIVE AFEGMSEVHI  780
IDIDIMHGLQ WPALFHILAL RPGGPPQSVR ITGLGTSMEL LEATGKRLSD FAQTLGLPFE  840
YIAVADRIGN VDPSALKVRM GRDALAVHWM QHSLYDVTGS DPQTLSLLRR LSPTVITLVE  900
QDLRHEGSFI NRFVEALHYY SALFDSLGAT HADQSTQRHI VEQQLLSCEI KNILAPGGPA  960
RRRSSKSTTT GGFGGGGGRQ AEPTTTRFGQ WQQELRQAGF KAVSLSGKAA TQAALLLGMF  1020
PSDGYTLVEQ SGTLKLGWKD LCLLTASAWS SCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-161652105013379Protein SCARECROW
5b3h_A1e-161652105012378Protein SCARECROW
5b3h_D1e-161652105012378Protein SCARECROW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-149GRAS family protein