PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0265s0014.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 229aa    MW: 25706.8 Da    PI: 4.4104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0265s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.2e-1486163799
                           .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           +  +++++++v+p  f++ + ++    kt +l+ + g++W+v +           + GW+ F+ +++L+ gD++vF+l+g+s+f  +vk
  Sphfalx0265s0014.1.p  86 NLAAMATHWMVIPAAFIKLYVND--VCKTAILQGPGGQVWQVDF-----------RVGWRTFAADHDLEKGDILVFTLTGKSQF--CVK 159
                           55667889*********999544..3479***************...........56**********************99999..*** PP

                           EE-S CS
                    B3  96 vfrk 99 
                           +f++
  Sphfalx0265s0014.1.p 160 IFDN 163
                           **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1974163IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-1774164IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-2076162No hitNo description
SMARTSM010191.2E-978164IPR003340B3 DNA binding domain
PfamPF023624.6E-1188163IPR003340B3 DNA binding domain
PROSITE profilePS508639.812130164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVFQIEFLVY LESSGSGEEE EEEEEEEEEK DGSHEDAQEF ERASEYLSPR TLQLAGSCGA  60
QRATEHRRVA NIPSSPSFVR VLVDSNLAAM ATHWMVIPAA FIKLYVNDVC KTAILQGPGG  120
QVWQVDFRVG WRTFAADHDL EKGDILVFTL TGKSQFCVKI FDNKTGTEKL SALEARNTGI  180
FDSQTFPVLG EKHKERDEEE MELQLHMKKL CFDIAEGGIM DENPHCKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400313.17e-47uncharacterized protein LOC112294259
RefseqXP_024400314.17e-47uncharacterized protein LOC112294259
RefseqXP_024400315.17e-47uncharacterized protein LOC112294259
RefseqXP_024400316.17e-47uncharacterized protein LOC112294259
TrEMBLA9TWB42e-45A9TWB4_PHYPA; Predicted protein
STRINGPP1S344_29V6.13e-46(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-11B3 family protein