PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0267s0001.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SRS

Protein Properties

Length: 274aa MW: 28371.8 Da PI: 9.1519

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0267s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	206.6	6.6e-64	66	229	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 +g+++Cq+CGnqakkdC+++RCRtCCksrgf+C+th+kstWvpaakrrerq++++aa++++ +++skr r+l ++ +++l+ + Sphfalx0267s0001.2.p 66 TGSTACQECGNQAKKDCSYQRCRTCCKSRGFECSTHLKSTWVPAAKRRERQAAESAAAASS--GLLRSKSKRARTLVANVANSLT---T 149 67899*******************************************98888775544..4467777777777444333333...3 PP DUF702 92 ssaeskkeletss.................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +sa+s++ ++ +s lP+ev+++a+f+cvr+ +v+dge+e+aYq++v+igGh+fkG+LydqG+++ Sphfalx0267s0001.2.p 150 TSATSPRGSDLNSahltathpsqpasskggLPPEVRAQALFKCVRLMGVEDGENEFAYQATVKIGGHIFKGVLYDQGVDN 229 334455555555555677888999***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-58	68	228	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-26	71	112	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-25	180	227	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MNVQSLQQHN PATASVHVGP SEPDNHLHLH ELWGAGGGKA KEIGGQQQQQ QQLVVAGGAG 60 TVVTGTGSTA CQECGNQAKK DCSYQRCRTC CKSRGFECST HLKSTWVPAA KRRERQAAES 120 AAAASSGLLR SKSKRARTLV ANVANSLTTT SATSPRGSDL NSAHLTATHP SQPASSKGGL 180 PPEVRAQALF KCVRLMGVED GENEFAYQAT VKIGGHIFKG VLYDQGVDNG QAAVPSLGEL 240 QLGGNRGGMP SSSALIDPST LYVSGSALLG ALR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359764.1	4e-84	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	1e-53	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	Q58GF3	9e-83	Q58GF3_PHYPA; Predicted protein
STRING	PP1S373_11V6.1	1e-83	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-45	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Sphfalx0267s0001.2.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]