 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sphfalx0268s0002.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
| Family | Trihelix | ||||||||
| Protein Properties | Length: 246aa MW: 27737.9 Da PI: 5.8911 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 46.8 | 7.8e-15 | 28 | 113 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstc 79
W e l L a+r +e++++ +++++W++++++m+e+gf er Ck kwenl ++k +k++e++ +e +
Sphfalx0268s0002.1.p 28 WDVAEMLSLAHAKRAEWEKYEQVTvreraemSAQQKWDAIGQYMQEHGFpERDGRGCKVKWENLLSDFKGVKDWENRSGNEGPAYW 113
9999**********9999999753444555699****************99*************************9655554444 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 3.3E-10 | 26 | 116 | No hit | No description |
| PROSITE profile | PS50090 | 7.619 | 36 | 92 | IPR017877 | Myb-like domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 246 aa Download sequence Send to blast |
MEEEALATSG QASKARLRLE KRSRARNWDV AEMLSLAHAK RAEWEKYEQV TVRERAEMSA 60 QQKWDAIGQY MQEHGFPERD GRGCKVKWEN LLSDFKGVKD WENRSGNEGP AYWAMSSNER 120 QAEGLPRQFA QELFDVLDNL YSTRQLPEDE FPESPTSTGL NTGLDNVGSG DRELGSSHRK 180 RKGVFANGVE KSIRETRDTC VAGIERERAL IGKERMEDDR ADRRALIGVL ATLASACDKI 240 ATKLN* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33550.1 | 7e-15 | Trihelix family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Sphfalx0268s0002.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|