PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0274s0024.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 252aa    MW: 28787.2 Da    PI: 8.0927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0274s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045155174322
                           ETTTTEEESSHHHHHHHHHH CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                           C+ Cg sF +   + +H+r+
  Sphfalx0274s0024.1.p 155 CSTCGPSFEDMAKYSSHLRK 174
                           ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF029921.2E-4511195IPR004242Transposon, En/Spm-like
PROSITE profilePS501578.663153185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MYRCTDLAEL MVWHKEHRSE PGVMRLPIDS PAHKHVGSTW PEFERDPRHG RPTSVWPVVV  60
MNYNLPPWLS MKKGFLLLSL IIPGPSKVKN LDTYLALVVD ELKTLWDGVW AYDGRKTTGG  120
IPRVFKLRAI YMWTMHDYPG FGFVSGLQTQ GYKACSTCGP SFEDMAKYSS HLRKIVYLGH  180
TKFLPLGHDM KSDPLLFSSF DMPYGDERDI PEATTFAYWR DVANRVIDLN DSMVFEGSGL  240
TRWGIFNSLP Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-