PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0284s0012.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family M-type_MADS
Protein Properties Length: 459aa    MW: 50646.6 Da    PI: 7.2475
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0284s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.9e-27959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien +nrqvt+skRrng++KKA+ELSvLCd++v +i+fs++gkl  y++
  Sphfalx0284s0012.1.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDVGLIMFSPSGKLTQYCN 59
                          68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.973161IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-31288IPR002100Transcription factor, MADS-box
CDDcd002652.63E-38271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.009138231IPR002487Transcription factor, K-box
PfamPF014865.8E-6141200IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDVGLIMFSP SGKLTQYCNC  60
SIEDVITRFA NMPLHERNKS FEDMLTRFAN FHMHHDRNKY NRKSENLEYL QKALKKLSGE  120
KDLALSQQLA ASGSGYEVGV LQEEVKKLIH EKDLLQQRAR LMLADEQMIQ NVTSVQQLAN  180
METELEQALE RVRQRKSYVT NAYDQAANAI QIRQHHEFMG NMQLMAMQQR GHGAGGSMQQ  240
AGTQAAAAAA AASSFLQWNM AEHEQPGATS LQDFMEHQSN ATNSQILPTP MSSREVVSNS  300
GASTSGFFPI PVSQTDQLHQ TLVAGHMNLP APRGLTIHEL DGMEHQSSTH HGPQFAEESS  360
KIKTKLEAGA AVCGHNNSMV AAFAASSSSG GTAEGSAETF VSPVLEQQQH AAAGNTNTTA  420
AVPWHSAHHH HHHHHHQAYS GSQYPAAYNF SQNSDAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-17185185MEF2 CHIMERA
6byy_B3e-17185185MEF2 CHIMERA
6byy_C3e-17185185MEF2 CHIMERA
6byy_D3e-17185185MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3344567e-51GQ334456.1 Sphagnum subsecundum MIKC* MADS-box transcription factor (MADS2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383906.11e-159agamous-like MADS-box protein AGL66 isoform X2
TrEMBLD3IZT90.0D3IZT9_9BRYO; MIKC* MADS-box transcription factor
STRINGPP1S90_121V6.21e-158(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-37AGAMOUS-like 66