PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0286s0010.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 255aa    MW: 28944.3 Da    PI: 11.2163
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0286s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07831126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ykt+lC  f+r G C++  +C+FaHg
  Sphfalx0286s0010.1.p  8 YKTKLCTLFQR-GNCPR-QSCSFAHG 31
                          9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-12537IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5636IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4732IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582733IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5831IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGSSHDLYKT KLCTLFQRGN CPRQSCSFAH GDAELRRFSN PMAAAASGSR SPFNNGRIES  60
GYHNGDLRDR LERRRSTPIR RHSPPFRGRP AAHYDRMLSP PDRGGRSRTR TPPIRPRLSR  120
SPSPQRSPPI ARRRESKRPR TAALEPHFSD VSGDVRGTED VNGEGDFKQL GPAAERMSSP  180
IPPRNPRDTH DTRDTLEDQH SLEKKIRETS NLSTQNQELE SRLAGANEDY RRLGSKLKLF  240
VKIYARYIHA QDVVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-11C3H family protein