PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0305s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 531aa    MW: 58350.5 Da    PI: 4.6724
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0305s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34721632102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+++++++sws+ +nsfvv+++ ef++ +LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  Sphfalx0305s0001.1.p  72 FLTKTYDMIDDATTDSIVSWSDCNNSFVVWNPPEFSQYLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGR 151
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           +ell+ i+r+k 
  Sphfalx0305s0001.1.p 152 RELLRGIHRRKP 163
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-3865155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5968161IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.39E-3468161IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-197295IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-3072161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-19110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340111135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-19123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MESDRTEIVQ FVFQEAGRVC SGSVGIDPAN SDMVPAPFVM NSEMSLHAQA AAAPAALLQP  60
MDGLQSNAPP PFLTKTYDMI DDATTDSIVS WSDCNNSFVV WNPPEFSQYL LPKYFKHNNF  120
SSFVRQLNTY GFRKVDPDRW EFANEGFLRG RRELLRGIHR RKPAAQSQQQ QAADGGLGPC  180
VEVGKAELKK EIEMLKKDKN VLMLELVRLQ HEQQNTDHEL QVMGERLQAT EHRQQQIMAF  240
LAKAVQTPGF LAHLVAQSGN NTLMAASARK KRRLAKGEIE GEVEDSFDPA ATTDGQIIAL  300
QTNGEVVHRI MQLLSPSDDN PTINEGYLYP LISDHDSAPV SSEGNTLNQQ SGVTFMDPST  360
GLAEHVHSDP VVTDPKKNED IVQLHPTSPT SDVARAAGDD HTEQGSGSSQ SWTRDTRDSN  420
IDSGGGNGGG PSVSTEVEEV SSSINDPAVV SGANDVFWEQ YLRGEPETPP TAWDTEPNHP  480
QETENRTWEY AKASVGIYRD DGRVPQARNW WDSKPPLHVL SHQMGQVAPG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-237016127129Heat shock factor protein 1
5d5v_B2e-237016127129Heat shock factor protein 1
5d5v_D2e-237016127129Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382543.11e-137heat stress transcription factor A-1b-like
TrEMBLA0A2K1LAL81e-136A0A2K1LAL8_PHYPA; Uncharacterized protein
STRINGPP1S249_84V6.11e-136(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-78heat shock transcription factor A1D