PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0341s0013.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 382aa    MW: 42876.5 Da    PI: 9.7055
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0341s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.91.2e-08167225255
                   AP2   2 gykGVrwdkkrgrWvAeIrd.pse..ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +kGV  ++k++ W+A+I+    +  ++ +   + +lg + t++eA + ++  ++kl++
  Sphfalx0341s0013.1.p 167 IFKGVGLHSKSKLWEAHIWLgELDpvRKnQGqGQLYLGAYETEDEAVRVHDLVALKLRK 225
                           69******************555577555446**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-6166234IPR016177DNA-binding domain
SMARTSM003800.0043167241IPR001471AP2/ERF domain
PROSITE profilePS5103212.774167234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-6168235IPR001471AP2/ERF domain
SMARTSM003809.9E-12271349IPR001471AP2/ERF domain
PROSITE profilePS5103211.746271343IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-7272343IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-7272343IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MADTFVDMNH EYDNDLVNVL EAIAAASEKA ASIRGTICED GADQRQQQPV VPSAAPRPAE  60
SHDQLMRPGS LVGVQAERLP RRAERDARKK SKRRIDGSMN RPIDLKEQTT RSTGASEIAA  120
GPPASKKPKR MVKGTMSCEL TAAAETTRSR KRKYPNVPST QERATSIFKG VGLHSKSKLW  180
EAHIWLGELD PVRKNQGQGQ LYLGAYETED EAVRVHDLVA LKLRKNDKYE LNFNDPGAYA  240
FEFPRLEALD TRDYIWSFRR NAVCFSRGTF RFKGVSKHSS GKKWEARICY TTTASSAAAG  300
GSRIIKKEDR YLGLHATEEE AARCVDMVAL HFHGWEDAIT NFAPSQYTKE MVQQHLERLE  360
KKDYKIPPDL LASWPKFHRA G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.15e-25AINTEGUMENTA-like 5