PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0358s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 450aa    MW: 50118.8 Da    PI: 6.5795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0358s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.86.1e-51181511128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                           +p+GfrFhPtdeelv +yL kkv++k+++l + i+++d+yk+ePwdL+          +++++++yfFs++dkky+tg+r+nrat++g+
  Sphfalx0358s0001.1.p  18 VPVGFRFHPTDEELVGYYLPKKVAAKTIDL-DLIRDLDLYKLEPWDLHDlckvqadDSNQKQTDYYFFSRKDKKYPTGNRANRATAAGF 105
                           599***************************.99**************844655444333355688************************ PP

                   NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           Wkatg+dk++++k ++l+g++ktLvfy+grap+g kt+W+mhe+rl
  Sphfalx0358s0001.1.p 106 WKATGRDKPIHTKLQQLIGMRKTLVFYEGRAPHGIKTEWIMHEFRL 151
                           *************9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5312173IPR003441NAC domain
PROSITE profilePS5100554.36318173IPR003441NAC domain
PfamPF023656.3E-2619151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSSQQQLLLQ QSTSAPRVPV GFRFHPTDEE LVGYYLPKKV AAKTIDLDLI RDLDLYKLEP  60
WDLHDLCKVQ ADDSNQKQTD YYFFSRKDKK YPTGNRANRA TAAGFWKATG RDKPIHTKLQ  120
QLIGMRKTLV FYEGRAPHGI KTEWIMHEFR LDDGPGMPAQ EDGGWVVCRV FKKTKSFKLK  180
LQERAYSFEE QMGGMLQDMS SPEIIPDMSS PEMLSTTNSA AAAAAGGEGM SCSYGHGNCF  240
PMLLQHQQQQ RCSNSQICKQ EQLNMNCNFN NSAVAFNPAH LSHSMTTGAS SSSSFIKNMT  300
LQGEAHHHHH HQHQHQHQGP VSLAATHNNN NSKSKEAFFT DEAYYMENPL NVFNEHRFDD  360
NGNHDDDHEE SCFPSAVYEG LDCLTYNDQA AAGTSSCKDL RFPSTSAAAR SAGAGAGAAA  420
AAGDQPLGDV TVLLQLKRQN PENMYELWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-431817617168NO APICAL MERISTEM PROTEIN
1ut4_B2e-431817617168NO APICAL MERISTEM PROTEIN
1ut7_A2e-431817617168NO APICAL MERISTEM PROTEIN
1ut7_B2e-431817617168NO APICAL MERISTEM PROTEIN
4dul_A2e-431817617168NAC domain-containing protein 19
4dul_B2e-431817617168NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-64NAC 007