PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0402s0002.3.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C3H

Protein Properties

Length: 210aa MW: 23201.8 Da PI: 8.3951

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0402s0002.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	51	66	11	26
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 + G+C++Gd+C+ +Hg Sphfalx0402s0002.3.p 51 AAGICPRGDNCPQIHG 66 67*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	9.0E-7	92	170	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	1.12E-8	93	174	No hit	No description
PROSITE profile	PS50089	8.963	110	168	IPR001841	Zinc finger, RING-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MASAGCYATS SCMERVSNEK IACSLIAGVT RLARYAHFIS VAFVLMAVVA AAGICPRGDN 60 CPQIHGDLCP TCGKHCLHPF RPSERDNHRQ QRERNQKKLE TLRKSQDIEC SVCLERVLSK 120 PTVAERKFGL MSGRDHPFCV GCIRGWRSGS HAPGMDIDTV VRACPVCQVT SHFIVPSVVW 180 YSSSEEKEDI INGYKNKLSI CLEMEVGRR*

Functional Description ? help Back to Top
Source	Description
UniProt	E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
UniProt	E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024375822.1	1e-86	E3 ubiquitin-protein ligase makorin-like isoform X2
Swissprot	Q5ZA07	6e-67	C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
Swissprot	Q6IDS6	4e-67	C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBL	A0A2K1KL26	6e-84	A0A2K1KL26_PHYPA; Uncharacterized protein
TrEMBL	A9T2C7	3e-84	A9T2C7_PHYPA; Predicted protein (Fragment)
STRING	PP1S154_11V6.1	8e-85	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	4e-67	C3H family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0402s0002.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sahi VP, et al. A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo. Plant Signal Behav, 2012. 7(3): p. 375-81 [PMID:22499205] Wadekar HB,Sahi VP,Morita EH,Abe S MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare). Planta, 2013. 237(4): p. 1083-95 [PMID:23262670]