PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0428s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 212aa    MW: 23790 Da    PI: 10.0241
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0428s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-1662153391
                           EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           k l psdv+++gr+vlpkk ae++        +e++ l +ed  +g++W+v+++y  +++s+ ++l ++   Fv++++ +egD +++++
  Sphfalx0428s0001.1.p  62 KLLQPSDVSSLGRIVLPKKEAESClpylA--VKEGMSLAMEDfDTGKTWKVRYRYwpNNRSR-MYLIENIGVFVRSHQPEEGDLLILYR 147
                           8899**********************743..347899*****9999*********5444444.66666********************4 PP

                           -SS.SEE. CS
                    B3  85 dgr.sefe 91 
                             + ++ +
  Sphfalx0428s0001.1.p 148 --NvECNK 153
                           ..435554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-2558159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-2059157IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-1260164IPR003340B3 DNA binding domain
PROSITE profilePS508639.85560164IPR003340B3 DNA binding domain
PfamPF023622.0E-1362155IPR003340B3 DNA binding domain
CDDcd100171.34E-1866158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MQQQPTASTA TGLAAPVAKK LLQQPVSSTA NKQQYSRNQF FINSRQKQQG PNTGTLVLLL  60
HKLLQPSDVS SLGRIVLPKK EAESCLPYLA VKEGMSLAME DFDTGKTWKV RYRYWPNNRS  120
RMYLIENIGV FVRSHQPEEG DLLILYRNVE CNKIVLYLDV LNTITGGGWS SRSSRRSAAA  180
ARRSREEEEK RREGKREGVE EVEGGTEGRS C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-29581563101B3 domain-containing transcription factor FUS3
6j9b_D1e-29581563101B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360679.12e-40B3 domain-containing transcription factor ABI3-like isoform X2
TrEMBLQ2ABS08e-39Q2ABS0_PHYPA; Transcription factor ABI3-like
STRINGPP1S7_115V6.11e-39(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-34B3 family protein