PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0516s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 230aa    MW: 25965.1 Da    PI: 8.8506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0516s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004173192322
                           ETTTTEEESSHHHHHHHHHH CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                           C+ Cg sF +   + +H+r+
  Sphfalx0516s0001.1.p 173 CSTCGPSFEDMAKYSSHLRK 192
                           ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF029923.4E-6011213IPR004242Transposon, En/Spm-like
PROSITE profilePS501578.663171203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MYRCTDLAEL MVWHKEHRSE PGVMRLPVDS PAHKHVESTW PEFQRDPRHV RLGLASDGVS  60
PHSLGGKGRP TSVWPVVVMN YNLPPWLSMK KGFLLLSLII PGPSKVKNLD TYLALVVDEL  120
KTLWDGVWAY DGRKTTGGIP RVFKLRAICM WTMHDYPGFG FVSGLQTQGY KACSTCGPSF  180
EDMAKYSSHL RKIVYLGHTK FLPLGHDMRS DPLLFSSFDM PYGDERDIL*