PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0013100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

FAR1

Protein Properties

Length: 881aa MW: 98495.5 Da PI: 7.9286

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0013100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.2	3.8e-25	92	180	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA ++GF vr+++s++sk n+++++ +fvCs+eg ++e++ +k+r++ a+ r gCka+l+v ++ dg+w+vtkl++eHnHe+ Spipo0G0013100 92 FYIAYAGRIGFCVRIARSRRSKCNETVIMLRFVCSREGWSREKRIVeGKKTRKRAASIREGCKAMLEVIRKGDGRWVVTKLVKEHNHEV 180 9***********************************8877665426788889999****************************96 PP
2	FAR1	56	1.3e-17	214	308	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA++vGF+ r+++s++s ++++ ++ ++vCsk+ +++ +++ + + ++ ++ r gC+a +++ +++ gkw+v+kl eH+H+lap Spipo0G0013100 214 FYYAYASRVGFEARVRQSRRSLHDETLKMLKLVCSKHRYHAGRESFedgklGQGHPHQDPSGRDGCDALFEIIRKDGGKWVVSKLIVEHSHPLAP 308 9**********************************999988877777777788889********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-23	92	180	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.9E-15	214	308	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.5E-19	416	498	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.682	687	723	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-9	694	720	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-8	698	725	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MDANGSGDDG LIEEHVDLED DSINFWATLG VSPHVHVSVG EHEAQMQEHL NHSSLELVDS 60 NARRDLFETD GDHRLEPYVG MEFESGEAAK TFYIAYAGRI GFCVRIARSR RSKCNETVIM 120 LRFVCSREGW SREKRIVEGK KTRKRAASIR EGCKAMLEVI RKGDGRWVVT KLVKEHNHEV 180 GMPSRVHYIA TEGDGAMEPY LGMEFDSLET ARTFYYAYAS RVGFEARVRQ SRRSLHDETL 240 KMLKLVCSKH RYHAGRESFE DGKLGQGHPH QDPSGRDGCD ALFEIIRKDG GKWVVSKLIV 300 EHSHPLAPAP PSRVRCVRSQ GEILVIAKNF ADTRNLLLNR QESHFPREVR YNDLGPEDAQ 360 GLLEYFKKAQ AESPAFFYSL QVEHGYMVNI LWADAKARMA YHYFGDAVTF DTSSVNDKNM 420 IPLVTFAGVN HHLQPVVFGC ALLVDDSEAS FVWLFENWLA AMSGRAPVSF VTDLNSCMAA 480 AVSKVFPGTR HRFCKRSVLR RVQEELSDVC GAHVSFEPDL SRCVDETESC EAFESCWESL 540 LDKYHLRDSP YLQSLYDIRH HWVPAYLKDT FFAEVAGIPR PESVVRAADK YLTAKTQLRV 600 AVRQLGQALA CRYEKEAQAD FDTLFNKPFL KTASPMEKQA AGIYTRTLFD RFQEEFVESL 660 GYHVDKIEDG MVSKYCVTKT VDARGAYMVA HSASSNRATC SCGMFEFSGI LCRHALRVFI 720 IVGIRTLPKD YIIKRWTRNA KSNVVSEECS AGGPWGGGGG GGGGGAAGGE DPSAARYNDL 780 CRDAMKCAKE GASSTEFYKV AKEALQRAVA EVISAKQKKE QQTLQNFIKS QKNRKQGKLS 840 SQKRGFGAKG VKKRAPRAGA LERENSDTDK KDSVVAEAAV *

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MDANGSGDDG LIEEHVDLED DSINFWATLG VSPHVHVSVG EHEAQMQEHL NHSSLELVDS  60
NARRDLFETD GDHRLEPYVG MEFESGEAAK TFYIAYAGRI GFCVRIARSR RSKCNETVIM  120
LRFVCSREGW SREKRIVEGK KTRKRAASIR EGCKAMLEVI RKGDGRWVVT KLVKEHNHEV  180
GMPSRVHYIA TEGDGAMEPY LGMEFDSLET ARTFYYAYAS RVGFEARVRQ SRRSLHDETL  240
KMLKLVCSKH RYHAGRESFE DGKLGQGHPH QDPSGRDGCD ALFEIIRKDG GKWVVSKLIV  300
EHSHPLAPAP PSRVRCVRSQ GEILVIAKNF ADTRNLLLNR QESHFPREVR YNDLGPEDAQ  360
GLLEYFKKAQ AESPAFFYSL QVEHGYMVNI LWADAKARMA YHYFGDAVTF DTSSVNDKNM  420
IPLVTFAGVN HHLQPVVFGC ALLVDDSEAS FVWLFENWLA AMSGRAPVSF VTDLNSCMAA  480
AVSKVFPGTR HRFCKRSVLR RVQEELSDVC GAHVSFEPDL SRCVDETESC EAFESCWESL  540
LDKYHLRDSP YLQSLYDIRH HWVPAYLKDT FFAEVAGIPR PESVVRAADK YLTAKTQLRV  600
AVRQLGQALA CRYEKEAQAD FDTLFNKPFL KTASPMEKQA AGIYTRTLFD RFQEEFVESL  660
GYHVDKIEDG MVSKYCVTKT VDARGAYMVA HSASSNRATC SCGMFEFSGI LCRHALRVFI  720
IVGIRTLPKD YIIKRWTRNA KSNVVSEECS AGGPWGGGGG GGGGGAAGGE DPSAARYNDL  780
CRDAMKCAKE GASSTEFYKV AKEALQRAVA EVISAKQKKE QQTLQNFIKS QKNRKQGKLS  840
SQKRGFGAKG VKKRAPRAGA LERENSDTDK KDSVVAEAAV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784021.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026658787.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026658788.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1D1ZGT2	0.0	A0A1D1ZGT2_9ARAE; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_008784021.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-156	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Spipo0G0013100