PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0013200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 777aa    MW: 87610.6 Da    PI: 8.7417
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0013200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.57.4e-2672160188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     +fY +YA++vGF vr++ks++s+r++++++r+fvC++eg+++++    + k++r+r +tr gC a+++v k+++g+w+v+kl++eH+H 
  Spipo0G0013200  72 EFYVAYATRVGFGVRMNKSRRSRRDDTVIMRRFVCTREGFHSKRVIYdDGKKKRKRGTTREGCMAMIEVIKKEHGRWVVSKLVTEHTHL 160
                     6*****************************************9987647889999*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2472161IPR004330FAR1 DNA binding domain
PfamPF105511.8E-30263355IPR018289MULE transposase domain
PROSITE profilePS5096610.917543579IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-6550575IPR007527Zinc finger, SWIM-type
SMARTSM005750.0018554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
METSAGEEDS FLRDNNVDLN DNSAGPSMTL DVASLEVGAG DLISSQRLQL DCPDVAEPAV  60
GMEFDTDEAA KEFYVAYATR VGFGVRMNKS RRSRRDDTVI MRRFVCTREG FHSKRVIYDD  120
GKKKRKRGTT REGCMAMIEV IKKEHGRWVV SKLVTEHTHL VMFPSKVRPR PEKLSVQSNA  180
MAAALAGDAS AAFNNLKYFN RGIRVNPFGE GGEAQSILEY LKRTQAENPA FFYAIQVDNN  240
NCMTNVFWAD AKARLAYSHF GDCVTFDTTY KKTKYMMPFA TFRGVNHHLQ SVTFGCALLM  300
DETKGSYIWL FETWLAAMGG RHPVSLVTDR DKAMEGAITR VFPNVCHYFC KWHILSRCKQ  360
KLSDVYSKHA SLKWDLKHCV NETETAEEFE ACWESILSKY NLWDNAWLRS LHEIRDRWVT  420
VFLKRSFFPE LCGGQRLESL NKFFKRNFNT KTSLLSFITR FEQSTASQCE KEAQADSSAA  480
YTRPSLKTPS PMEKQAAEVY TGAVFEKFQE EFVQSLGFFV EKIEGGPVSK FSVTKEEDAS  540
KTYIVSLHEP ETEAGCSCSK FESSGILCRH VLRVFFIVGV RVLPEKYVLR RWTKNATTGG  600
DDAPEELAAD AGLSFQEHLV AWYNDLCRDA VRYGMEGAVS GEIYRVAKAS LQKAFADLIV  660
SKSAPKKAQN PSMQRIRLQK MQYKMPLPKL QQSKVQGKGA RREDAGRKRR NYSLQLSAEA  720
SPCNLVLQPW NRSSAGADEG RRGVIASSGD CISALQPSSS PDPNVDRYER ARIILV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785327.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1D1Y7050.0A0A1D1Y705_9ARAE; Protein FAR1-RELATED SEQUENCE 5
STRINGXP_008785327.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-151FAR1-related sequence 3