PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0019400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ZF-HD
Protein Properties Length: 221aa    MW: 23826.5 Da    PI: 7.36
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0019400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.85.4e-331973358
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                    +vrY+eClkNhAa++Ggh++DGCgEfmps geegt++alkCaAC CHR+FHR+eve
  Spipo0G0019400 19 TVRYRECLKNHAARIGGHVLDGCGEFMPS-GEEGTTEALKCAACACHRSFHRKEVE 73
                    79**************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-211870IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-302072IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.7E-302172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4012271IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.97E-19148215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30149219IPR009057Homeodomain-like
TIGRFAMsTIGR015652.9E-27158215IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
GTGPSAASSV PRTLGSGPTV RYRECLKNHA ARIGGHVLDG CGEFMPSGEE GTTEALKCAA  60
CACHRSFHRK EVEGGEEAEG LFAGGHDDEE NNYSGGTTTT ESSSEEMQAH MLAAAGVTPF  120
RQVAHSSHPF QASHAVGMGE MQHYQIAGGP GSASGSAKKR HRTKFTAEQK EMMAEFAERV  180
GWRMQKQDDG ALERFCREAG VSRQVFKVWM HNNKNVVLKS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-251582141773ZF-HD homeobox family protein
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A200R7P23e-59A0A200R7P2_9MAGN; Homeobox domain
STRINGXP_010539899.12e-59(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.15e-50homeobox protein 24