PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0019500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 94aa    MW: 10192.3 Da    PI: 8.464
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0019500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091258347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+   +l+ +a + + ++   +W  +ar +g g++++++k ++ ++
   Spipo0G0019500 12 AWTAKQNKLFEKALAVYDKDtpdRWQNVARAVG-GKSAEEVKKHYEDL 58
                     8********************************.***********765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.768863IPR017884SANT domain
SMARTSM007179.5E-8961IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-131167IPR009057Homeodomain-like
PfamPF002493.0E-71258IPR001005SANT/Myb domain
CDDcd001678.68E-71259No hitNo description
Gene3DG3DSA:1.10.10.605.6E-41260IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASNSKCSSS SAWTAKQNKL FEKALAVYDK DTPDRWQNVA RAVGGKSAEE VKKHYEDLID  60
DVKFIESGRV PLPNYRNSAA GGGGSSIADE ERR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-35992786RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545280.18e-42protein RADIALIS-like 4 isoform X1
RefseqXP_028198407.18e-42protein RADIALIS-like 4 isoform X1
SwissprotQ1A1734e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445H2R22e-40A0A445H2R2_GLYSO; Protein RADIALIS-like 1 isoform A
TrEMBLK7M5F62e-40K7M5F6_SOYBN; Uncharacterized protein
STRINGGLYMA14G08101.13e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-33RAD-like 6