PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0020800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Protein Properties

Length: 186aa MW: 20377.3 Da PI: 9.6007

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0020800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.3	4.3e-16	68	155	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp+ f+ eh kk ++ +tl de+g++ + +k++ l++GW++F+ +++L +gD v+F+l++r++f + Spipo0G0020800 68 FVKLMLQSHVTGGFWLGLPRAFCLEHLPKK--DTPMTLIDERGEESPTLYLAEKNG----LSAGWRGFAIDHELVDGDAVIFELVSRTTF--KAY 154 89**********************6454..44599999999999556665....9*********************998888..555 PP E CS B3 96 v 96 + Spipo0G0020800 155 I 155 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-18	60	159	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-22	63	158	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.57E-24	66	157	No hit	No description
SMART	SM01019	2.1E-19	68	159	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.519	68	159	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.1E-14	68	157	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MAMIRRGLLL PGFLSEGSSS DAAMLSTIAR AGRRDLSDRV YASDAARAYA EETAKALQSQ 60 LASGFPSFVK LMLQSHVTGG FWLGLPRAFC LEHLPKKDTP MTLIDERGEE SPTLYLAEKN 120 GLSAGWRGFA IDHELVDGDA VIFELVSRTT FKAYIIRQRG YYEAGTRGPE GRAKKKRRYP 180 VSAPC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	177	KKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922411.1	2e-61	B3 domain-containing protein Os06g0194400 isoform X1
Refseq	XP_010922412.1	2e-61	B3 domain-containing protein Os06g0194400 isoform X1
Refseq	XP_010922413.1	2e-61	B3 domain-containing protein Os06g0194400 isoform X2
Swissprot	Q1G3M3	1e-56	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1D1Y4V5	2e-73	A0A1D1Y4V5_9ARAE; B3 domain-containing protein Os06g0194400
STRING	EMT13106	3e-60	(Aegilops tauschii)
STRING	Traes_7DS_A234A13E1.2	3e-60	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-50	B3 family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0020800

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]