PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0029600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 164aa    MW: 18049.3 Da    PI: 8.7664
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0029600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.59.5e-11137160124
         G2-like   1 kprlrWtpeLHerFveaveqLGGs 24 
                     k+r++W+peLH+rFv+a+++LGG 
  Spipo0G0029600 137 KARRCWSPELHRRFVDALHRLGGL 160
                     68*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-8135159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MLPEGAPPLH AIEDLEEELA RCGGGGAAHP KLEEFIPINR KFEEAGRSKD EEDRREKANW  60
MSSAQLWSDT SSTSNSGDSK NRSRQRSPEE EDDRFKGLPA ASYKNGRAAA AVPRLPVLSF  120
LPPPGMLLPS PQQTPRKARR CWSPELHRRF VDALHRLGGL KGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792589.19e-28myb family transcription factor EFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.18e-11G2-like family protein