PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0043400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 216aa    MW: 22985.4 Da    PI: 10.5914
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0043400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.5e-1988121134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Spipo0G0043400  88 CSECNTTKTPLWRSGPGGPKSLCNACGIRQRKAR 121
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.28E-1380122No hitNo description
SMARTSM004013.4E-2082133IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.13682118IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-1586121IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.72E-1187115No hitNo description
PfamPF003201.6E-1688121IPR000679Zinc finger, GATA-type
PROSITE patternPS00344088113IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGSVATTGDG ESSHKDGDGE ECNPLDSGSG KWMSSKMRFM RKMTGSDKIT SGRPRKNALG  60
SNDHLRQFAE NNVNGDNQIL PNGSIRVCSE CNTTKTPLWR SGPGGPKSLC NACGIRQRKA  120
RRAMAAAAAA VTGGLIPAVA PVVKVRKQKR SPGACAVPFK KRFKCFAAAE TRHKLHFDEL  180
TIALSKNSAF HGVFPQDEKE AAILLMALSC GLIRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915216.14e-60protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A1D1YP951e-72A0A1D1YP95_9ARAE; Putative GATA transcription factor 22 (Fragment)
STRINGXP_008797761.11e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-34cytokinin-responsive gata factor 1