PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0047400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NF-YC

Protein Properties

Length: 199aa MW: 21220.5 Da PI: 4.2688

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0047400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	29.2	2e-09	77	155	19	96
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi.aaavtrtdifdflvdiv 96 ++P r+k+i+k d +++++ +ea l+s + +lf+ l+ ++ a +k+++++ + +aa ++ dfl+d + Spipo0G0047400 77 PSFPPGRVKRIMKLDREINKVNSEAVFLISLSTDLFLALLAEKAGEAALAKKKKSVRMDHLlSAARSHPPCRDFLLDSI 155 57999*************************************************9988625666778899*9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.5E-17	77	140	IPR009072	Histone-fold
Pfam	PF00808	2.1E-13	78	140	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.29E-15	78	174	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MEAEEEQRAQ GEGDEEAEAE REAREEEQGE GEGQAGAGSV AEGEEEEDEG DQGAEEGGTV 60 GVEEEGEEAG EGGALQPSFP PGRVKRIMKL DREINKVNSE AVFLISLSTD LFLALLAEKA 120 GEAALAKKKK SVRMDHLLSA ARSHPPCRDF LLDSISLPTK PLPPPEAKQA PPKIAKPLPP 180 GARRIDQFFR KPSSVAPE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925346.1	6e-41	chromatin accessibility complex protein 1
Refseq	XP_010925347.1	6e-41	chromatin accessibility complex protein 1
Refseq	XP_021644338.1	6e-41	nuclear transcription factor Y subunit gamma-like
TrEMBL	A0A1D1Y4S8	7e-46	A0A1D1Y4S8_9ARAE; Putative transcription factor C16C4.22 (Fragment)
STRING	VIT_01s0010g03550.t01	4e-39	(Vitis vinifera)
STRING	XP_008786575.1	5e-39	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13342	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	5e-19	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	Spipo0G0047400