PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0051900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 178aa MW: 19279.5 Da PI: 6.9489

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0051900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	63.5	4e-20	15	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ...kYRl 55 p l+Wt +LHerF+e+v++LGG+ kAtP+++ +lm+ gLtl+++k LQ kYRl Spipo0G0051900 15 PGLKWTGQLHERFLEVVSRLGGASKATPRSVERLMGASGLTLYQLKIQLQarfKYRL 71 5699**********************************************7777887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-19	12	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-8	13	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-13	15	67	IPR006447	Myb domain, plants
Pfam	PF14379	5.2E-14	103	142	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MVDDQSVAPS SHARPGLKWT GQLHERFLEV VSRLGGASKA TPRSVERLMG ASGLTLYQLK 60 IQLQARFKYR LAVKRSSEAS SHGTEEEGGG GGGSFPGNQR ARQAPMELQR KSEERLEVQR 120 HLQLRIEAQG RYLQSVLERA REMLEMDAAD SQPSPAADAD CLSSDGSCLT ENDGPSG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070990.1	1e-40	myb family transcription factor PHL8
TrEMBL	A0A1D1XUC7	1e-41	A0A1D1XUC7_9ARAE; Myb family transcription factor APL
STRING	EOY01900	8e-37	(Theobroma cacao)
STRING	GSMUA_Achr2P01180_001	1e-36	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	6e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0051900