PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0052500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Nin-like

Protein Properties

Length: 145aa MW: 16008.7 Da PI: 10.8634

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0052500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.9	5.4e-25	1	48	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le++s+yF+ pi+ AAkeL+++lT LK++CR++GI+RWPhRk+ksl Spipo0G0052500 1 MTLEEVSRYFYVPITVAAKELKMGLTQLKKKCRELGIPRWPHRKMKSL 48 689*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	1	68	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-21	1	48	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MTLEEVSRYF YVPITVAAKE LKMGLTQLKK KCRELGIPRW PHRKMKSLQA LISNVQELGR 60 EDGEMGEMQL QRAIEILEGE RAAMERVPGT QLEERTKRLR QACFKANFKK RRQSKGGVAA 120 AAAAAAAGRR NPVKASCPSA TGVP*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020255496.1	3e-55	protein RKD1-like isoform X2
Swissprot	Q9M9U9	2e-42	RKD1_ARATH; Protein RKD1
TrEMBL	A0A199VQN9	4e-55	A0A199VQN9_ANACO; Protein RKD1
STRING	XP_008802620.1	2e-51	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-44	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Spipo0G0052500