PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0061000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 410aa    MW: 45443.2 Da    PI: 5.0269
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0061000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.8e-13360407347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      rWT++E++ l +av+++G+g+Wk I +      + Rt+ ++k++w++ 
   Spipo0G0061000 360 RWTPQEEDALREAVRKHGKGNWKIILQSHReafEERTEVDLKDKWRNM 407
                      9********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.164353409IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-13356409IPR009057Homeodomain-like
SMARTSM007177.1E-5357409IPR001005SANT/Myb domain
CDDcd116608.24E-19359409No hitNo description
SuperFamilySSF466891.15E-14360408IPR009057Homeodomain-like
PfamPF002493.9E-11360407IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDDPRDVSRV RGFLLEHPIE EWLAKEILRC LPSPQLLDPR LKKALLLRRL SFDVSSGRLS  60
EDTLRSLELL EELDRSLGAA SPPKALVAAY CAVAADVTVS PLRDPRSKVN AEADFFDAVN  120
RIWNCRVADV ERSVARGLVG EGLMRWRTVI KEALGSAAAR ERLLRWNTGW EAAEALREYL  180
RVALKEMGPQ LLELVARAVA DGEEEEAEEA AGRCDEAVDA EPSNSGACEE AVMREAKGLD  240
AGPSDARGGD EAVEGSGVEE LETRGGGLDV EPSKKSLEQS IYETERTAPL AGQASVDASM  300
DGDQRSKELG LVPSPEEDEN AVRSPSSSRG AHLATPRRRR VPSLRLQEIA KFVRTRKIKR  360
WTPQEEDALR EAVRKHGKGN WKIILQSHRE AFEERTEVDL KDKWRNMTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328339RGAHLATPRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YGV03e-55A0A1D1YGV0_9ARAE; Telomeric repeat-binding factor 1 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1605037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-14MYB_related family protein