PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0068300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 134aa    MW: 14013.9 Da    PI: 11.1099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0068300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-203584255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+W+AeIrdp     +  r++lg+f tae+Aa+a+++a+++++g
  Spipo0G0068300 35 RYRGVRRRP-WGKWAAEIRDPM----KgVRVWLGTFATAEDAARAYDRAARRIRG 84
                    7********.**********84....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.81E-183592No hitNo description
SuperFamilySSF541712.88E-233592IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-323593IPR001471AP2/ERF domain
PfamPF008473.3E-133584IPR001471AP2/ERF domain
PROSITE profilePS5103224.6983592IPR001471AP2/ERF domain
SMARTSM003801.9E-373598IPR001471AP2/ERF domain
PRINTSPR003676.9E-123647IPR001471AP2/ERF domain
PRINTSPR003676.9E-125874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MCGGGIATDY LGGGAAGVDS PAGPPPPPPR GRKNRYRGVR RRPWGKWAAE IRDPMKGVRV  60
WLGTFATAED AARAYDRAAR RIRGKKAKVN FPRAEEPPPA DGGAPSAPSP PTAGGGCRPS  120
MKSYLRFLED GSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-233592563ATERF1
3gcc_A2e-233592563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386485.12e-37PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotO222593e-34ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLM0U7T96e-36M0U7T9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP09790_0011e-36(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-10ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]