PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0079200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 361aa    MW: 39206.8 Da    PI: 4.8424
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0079200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-091146440
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     W t E++ll++av ++G+ +W+++a +++ +R++ ++
   Spipo0G0079200 11 WGTREELLLACAVSRHGTQSWDSVAMEVQ-TRSPFSL 46
                     9****************************.9998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0075763IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-5747IPR009057Homeodomain-like
CDDcd001674.71E-61160No hitNo description
Gene3DG3DSA:1.10.10.602.4E-41165IPR009057Homeodomain-like
PfamPF002492.1E-81144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTRSGGREEF WGTREELLLA CAVSRHGTQS WDSVAMEVQT RSPFSLVLDP QTCRRRYHAL  60
QRRFTAEERG IGGGDAGDGV GSSAIPLLEE LRKLRVAELR REVESYDVSI TSLQHKVKKL  120
KEDRERSLEG EQSGEGRPDP PETDGREEET VVPSTLPENQ AVDRACGGDS GRSFDESNSS  180
EAKEGSHGAV SVSEQNGAEK IDPLTGDEDK IGGEVSYDGS SDTVAKETEV AAPDGGPGVA  240
RQPDVGESGE SVAESKGEAP VKENSDVQSS ASLSRRRRGR RKSSRGGSRS RPRGDEAEAD  300
EVSPGNTLNL AESQPLVSFL EIFRSHEYGS VFERRLKIQA HFQERRDRID GLVFHAISAV  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943521.14e-95uncharacterized protein LOC105061234 isoform X1
TrEMBLA0A1D1YLA41e-111A0A1D1YLA4_9ARAE; Transcription factor GTE9
STRINGXP_010265891.17e-73(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-41DNA-binding bromodomain-containing protein