PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0079600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family AP2
Protein Properties Length: 155aa    MW: 18190.5 Da    PI: 10.672
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0079600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.8e-15158355
             AP2  3 ykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+GV++++++gr++A+++d  ++  g  ++ +++s g ++t+e+Aa+a++ a++k++g
  Spipo0G0079600  1 YRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVSQGGYDTEEKAARAYDLAALKYWG 58
                    9******************988886678446*************************98 PP
2AP227.39.3e-09103138342
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42 
                     y+GV+++++ grW A+I  +     +k  +lg+f   +eA
  Spipo0G0079600 103 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSK-FEA 138
                     9***************988532...5********99.998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.48E-19167No hitNo description
PROSITE profilePS5103218.558166IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-16167IPR016177DNA-binding domain
PRINTSPR003671.5E-619IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-14166IPR001471AP2/ERF domain
PfamPF008471.5E-12158IPR001471AP2/ERF domain
SMARTSM003801.9E-24172IPR001471AP2/ERF domain
PRINTSPR003671.5E-64868IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-7101137IPR016177DNA-binding domain
PROSITE profilePS510329.256102138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-5102137IPR001471AP2/ERF domain
SMARTSM003803.2E-4102149IPR001471AP2/ERF domain
PfamPF008471.5E-4103138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVSQGGYD TEEKAARAYD LAALKYWGPS  60
THINFPIEGY QGELEDMKNM SRQEYVAHLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG  120
RVAGNKDLYL GTFSKFEALW GFVYNSRQRC RLLLR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779660.16e-91AP2-like ethylene-responsive transcription factor CRL5, partial
SwissprotQ84Z021e-85CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2H3X7Z81e-89A0A2H3X7Z8_PHODC; AP2-like ethylene-responsive transcription factor CRL5
STRINGXP_009610222.17e-88(Nicotiana tomentosiformis)
STRINGXP_008779660.12e-90(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.13e-84AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]