PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0095000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HSF
Protein Properties Length: 257aa    MW: 28568.9 Da    PI: 7.4518
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0095000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19.2e-36421342103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  e+         weF+++ F+kg+k+ll++
  Spipo0G0095000  42 FLTKTYQLVDDPATDHVVSWGDDHSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFANELFRKGEKHLLCD 127
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  Spipo0G0095000 128 IHRRKTS 134
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-3834126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-5738131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-3439131IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.8E-204265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-2093105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MALAAAPVAS PLEPCSGSEG GDCGGAATLL TLEPHRAVPA PFLTKTYQLV DDPATDHVVS  60
WGDDHSTFVV WRPPEFARDI LPNYFKHNNF SSFVRQLNTY GFRKIVPERW EFANELFRKG  120
EKHLLCDIHR RKTSSSPSTS PHAPLHLPFQ HYHPHTPGAN ASTAASYFSS FSTSPDEHIS  180
PSGGWCDSFS SPISSPRVAP PGSGLLEDNE RLRRANATLL SELAHMRKLY NDIIYFVQNH  240
PRETFNGERE RGKKVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-243813617125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560023e-95AK356002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017186.13e-92PREDICTED: heat stress transcription factor B-4-like
RefseqXP_012466618.12e-92PREDICTED: heat stress transcription factor B-4-like isoform X1
RefseqXP_016706734.12e-92PREDICTED: heat stress transcription factor B-4-like isoform X1
SwissprotQ9C6352e-89HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2P5SGA14e-91A0A2P5SGA1_GOSBA; Uncharacterized protein
STRINGGorai.002G135200.11e-91(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-88heat shock transcription factor B4