PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0098000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 580aa    MW: 62985.6 Da    PI: 9.8548
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0098000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3621e-19121220399
                     EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     kvltpsd+++ g +++pk +a+++      + +k+ s+tl ++d++g++ ++++iyr++++r++lt+ W  Fv+ ++L +gD+vvF   ++++++
  Spipo0G0098000 121 KVLTPSDANNGGAFSVPKICADRIfppldyS-EKTPSQTLFVRDLQGNEIRFQHIYRGTPRRHLLTTHWATFVNTKKLIAGDSVVFI--KDRSGQ 212
                     89**************************963.455677*************************************************..567888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                      +v+++r+
  Spipo0G0098000 213 IFVGLRRA 220
                     99999986 PP
2Auxin_resp32.92.8e-12260340182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                     aa++a ++ +Fev+Y+P ++ +eFv +++ v   ++ +  +G R++ + e+eds +     Gtv+      +  + +S+Wr +
  Spipo0G0098000 260 AARSALERRPFEVTYYPTVGLPEFVLRRDLVDGVFDASRFLGARVRSR-EGEDSTRMPSsLGTVTRAIRHRQ-PFLRSPWRTM 340
                     577888999*************************************77.888888877669***97766443.79******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-31113228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-23115222IPR015300DNA-binding pseudobarrel domain
CDDcd100173.45E-14118215No hitNo description
PROSITE profilePS508639.404119221IPR003340B3 DNA binding domain
SMARTSM010193.6E-11119221IPR003340B3 DNA binding domain
PfamPF023621.4E-17121220IPR003340B3 DNA binding domain
PfamPF065075.0E-8260340IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MASDSVAAIG VQEFSVDPHI WAACAGRSGV IPPVGTAVYY FPQGHAEQAF CLVEWGKCAD  60
DLSAFLCRME SIQFLANRST DEVFAKVRLE AYGPDPAPLP AGGGAPPEVA GREEKLLSVS  120
KVLTPSDANN GGAFSVPKIC ADRIFPPLDY SEKTPSQTLF VRDLQGNEIR FQHIYRGTPR  180
RHLLTTHWAT FVNTKKLIAG DSVVFIKDRS GQIFVGLRRA GRSGGIAPSA PSAAGESSTT  240
GQHFSRNRRG WVAPQAVLEA ARSALERRPF EVTYYPTVGL PEFVLRRDLV DGVFDASRFL  300
GARVRSREGE DSTRMPSSLG TVTRAIRHRQ PFLRSPWRTM EVSWDKQDGL QNGTMVSPWQ  360
VEVVPGPPVF VPSHLTKKPR TTENGGLGIP GAGRRPTPMP ALGFLGLACT GMPAPAMDPS  420
SSRQRVPPGD GIQGARQDLP SPAPSGFRPY RGRLSGTPDK IISPSPQNGE PSRGSAAIQN  480
AGFQLTVQGS FVQLPAPVVR GDEEPLSPGT ENHIREYGRF NFFLIDEMKQ MEKNKEEGPL  540
EAPKREHPTP TSTRILELTI PLVPNVMKTK LGVFRISSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-531036245388Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-78auxin response factor 17