PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0119800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 83aa MW: 9002.41 Da PI: 10.9327

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0119800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.9	3.1e-07	48	73	4	29
HHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 4 ahnerErrRRdriNsafeeLrellPk 29 ++ e+Er+RR++++ f+ Lr+l+P Spipo0G0119800 48 KNLEAERKRRAKLKGQFFALRSLVPR 73 66799********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.49E-7	37	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.623	44	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.70E-5	46	72	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.1E-6	47	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-5	47	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MPRQQRWGTG AADHDCGGYL VAGLLGGAAA ERTQHPGGVT PEIVYKSKNL EAERKRRAKL 60 KGQFFALRSL VPRITKACER KP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	7e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0119800