PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0123100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Protein Properties

Length: 245aa MW: 27289.8 Da PI: 8.9072

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0123100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.9	7.4e-32	19	121	1	97
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+kv tpsdv+k++rlv+pk++ae+h + +e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + Spipo0G0123100 19 FDKVVTPSDVGKLNRLVIPKQHAEKHfpldPSCSEKGLSLCFEDRTGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFQRGlGEsAR 113 89***********************998444457789**********************************************65455455 PP E..EEEEE CS B3 90 felvvkvf 97 +l++ + Spipo0G0123100 114 HRLFIDWK 121 56666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-42	12	131	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.03E-30	16	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.23E-27	17	106	No hit	No description
PROSITE profile	PS50863	14.325	19	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-29	19	123	IPR003340	B3 DNA binding domain
SMART	SM01019	3.1E-22	19	124	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDSTDNGGGA AMVEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKHFPLDPS CSEKGLSLCF 60 EDRTGKQWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD TVSFQRGLGE SARHRLFIDW 120 KRRPDLPMSP RLHQNPALMS FARSVVPWTN FVSSTSGTFD PRRHLGFAYN AAAYPSDTFC 180 NAAAKRVRLF GVNLDCAATG EADSDGDSAD RLRLSLGGSE IPQSPIKDKH PMSLDLEILN 240 AVTV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	7e-62	12	126	1	116	B3 domain-containing transcription factor NGA1
5os9_B	7e-62	12	126	1	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798126.1	8e-78	B3 domain-containing protein Os03g0120900-like
Swissprot	Q8LMR9	1e-71	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A1D1XRL4	6e-84	A0A1D1XRL4_9ARAE; B3 domain-containing protein Os03g0120900
STRING	GSMUA_Achr1P03600_001	4e-75	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-67	B3 family protein

Link Out ? help Back to Top
Phytozome	Spipo0G0123100

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]