PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0124900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 153aa    MW: 16515.7 Da    PI: 8.0488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0124900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.93.5e-1290112224
                     --SS-EEEEEEE--TT-SS-EEE CS
            WRKY   2 dDgynWrKYGqKevkgsefprsY 24 
                     dDgy+WrKYGqK++k+s++pr +
  Spipo0G0124900  90 DDGYKWRKYGQKSIKNSPNPRTF 112
                     8********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081113.33384148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-1085112IPR003657WRKY domain
SuperFamilySSF1182903.01E-986112IPR003657WRKY domain
SMARTSM007748.0E-689127IPR003657WRKY domain
PfamPF031065.0E-890111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGEILDGERH FFPWQHAADG IPQVDREAII RKLLPTVYSG PTIGDIENAL AFTCRGAIES  60
GGLAFPEKGF NKMENKYTLR IKCCANGVAD DGYKWRKYGQ KSIKNSPNPR TFVSKISMGS  120
DSISDSIIRL RFSSATAAEE AVAVNTEGLG GA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920544.17e-37probable WRKY transcription factor 49
TrEMBLA0A1D1XT661e-43A0A1D1XT66_9ARAE; Putative WRKY transcription factor 49
STRINGXP_008777314.19e-36(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-20WRKY DNA-binding protein 49